Difference between revisions of "RXN-11109"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** RNA helicase * ec number: *...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
 
* common name:
 
* common name:
 
** RNA helicase
 
** RNA helicase
* ec number:
 
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Wound-RNA]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[Unwound-RNA]][c]
+
** 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Unwound-RNA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
** 1 H2O[c] '''+''' 1 ATP[c] '''+''' 1 wound RNA[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 an unwound RNA[c]
+
** 1 wound RNA[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 an unwound RNA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* Gene: [[SJ11360]]
+
* Gene: [[SJ03219]]
** Source: [[annotation-saccharina_japonica_genome]]
+
*** Assignment: EC-NUMBER
+
* Gene: [[SJ16850]]
+
** Source: [[annotation-saccharina_japonica_genome]]
+
*** Assignment: EC-NUMBER
+
* Gene: [[SJ02643]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 29: Line 23:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ10231]]
+
* Gene: [[SJ20527]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ21392]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ17685]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ11729]]
+
* Gene: [[SJ20707]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ01379]]
+
* Gene: [[SJ03193]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ15312]]
+
* Gene: [[SJ16137]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ20527]]
+
* Gene: [[SJ03475]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ14993]]
* Gene: [[SJ03219]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ07645]]
+
* Gene: [[SJ11489]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ08648]]
+
* Gene: [[SJ14697]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ16611]]
+
* Gene: [[SJ10491]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ01391]]
+
* Gene: [[SJ20357]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ05601]]
+
* Gene: [[SJ20685]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ17302]]
+
* Gene: [[SJ16850]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ10491]]
+
* Gene: [[SJ12415]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ05623]]
+
* Gene: [[SJ19261]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ01156]]
+
* Gene: [[SJ05947]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ10233]]
+
* Gene: [[SJ13507]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ05312]]
+
* Gene: [[SJ04981]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ11196]]
+
* Gene: [[SJ04253]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ13507]]
+
* Gene: [[SJ03965]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ17685]]
+
* Gene: [[SJ19571]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ04253]]
+
* Gene: [[SJ15312]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ19003]]
+
* Gene: [[SJ10231]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 102: Line 96:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ20510]]
+
* Gene: [[SJ05623]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 108: Line 102:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ04908]]
+
* Gene: [[SJ19003]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ21393]]
+
* Gene: [[SJ03774]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ16350]]
+
* Gene: [[SJ03683]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ21718]]
+
* Gene: [[SJ03056]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ13464]]
+
* Gene: [[SJ19262]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ08578]]
+
* Gene: [[SJ01379]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ02856]]
+
* Gene: [[SJ10233]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ04318]]
+
* Gene: [[SJ08578]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03965]]
+
* Gene: [[SJ20827]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ05713]]
+
* Gene: [[SJ04318]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ12415]]
+
* Gene: [[SJ05312]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 145: Line 139:
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
* Gene: [[SJ14697]]
+
* Gene: [[SJ02856]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ05160]]
+
* Gene: [[SJ07645]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03193]]
+
* Gene: [[SJ01391]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03475]]
+
* Gene: [[SJ03809]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ04981]]
+
* Gene: [[SJ16611]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03683]]
+
* Gene: [[SJ02643]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ19571]]
+
* Gene: [[SJ17302]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ16137]]
+
* Gene: [[SJ05160]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ19261]]
+
* Gene: [[SJ05601]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ11489]]
+
* Gene: [[SJ21392]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03056]]
+
* Gene: [[SJ04908]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03809]]
+
* Gene: [[SJ11360]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ19262]]
+
* Gene: [[SJ08648]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ01156]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 187: Line 184:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ20827]]
+
* Gene: [[SJ02461]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ05947]]
+
* Gene: [[SJ05713]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ14993]]
+
* Gene: [[SJ20510]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ20685]]
+
* Gene: [[SJ13464]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ20357]]
+
* Gene: [[SJ14696]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ20707]]
+
* Gene: [[SJ21393]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ03774]]
+
* Gene: [[SJ21718]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ02461]]
+
* Gene: [[SJ11729]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[SJ14696]]
+
* Gene: [[SJ11196]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ16350]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 223: Line 223:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13066 13066]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=RNA helicase}}
 
 
{{#set: ec number=EC-3.6.4.13}}
 
{{#set: ec number=EC-3.6.4.13}}
{{#set: gene associated=SJ11360|SJ16850|SJ02643|SJ13508|SJ10231|SJ21392|SJ11729|SJ01379|SJ15312|SJ20527|SJ03219|SJ07645|SJ08648|SJ16611|SJ01391|SJ05601|SJ17302|SJ10491|SJ05623|SJ01156|SJ10233|SJ05312|SJ11196|SJ13507|SJ17685|SJ04253|SJ19003|SJ09130|SJ20510|SJ16814|SJ04908|SJ21393|SJ16350|SJ21718|SJ13464|SJ08578|SJ02856|SJ04318|SJ03965|SJ05713|SJ12415|SJ10485|SJ14697|SJ05160|SJ03193|SJ03475|SJ04981|SJ03683|SJ19571|SJ16137|SJ19261|SJ11489|SJ03056|SJ03809|SJ19262|SJ14303|SJ20827|SJ05947|SJ14993|SJ20685|SJ20357|SJ20707|SJ03774|SJ02461|SJ14696}}
+
{{#set: common name=RNA helicase}}
 +
{{#set: gene associated=SJ03219|SJ13508|SJ20527|SJ17685|SJ20707|SJ03193|SJ16137|SJ03475|SJ14993|SJ11489|SJ14697|SJ10491|SJ20357|SJ20685|SJ16850|SJ12415|SJ19261|SJ05947|SJ13507|SJ04981|SJ04253|SJ03965|SJ19571|SJ15312|SJ10231|SJ09130|SJ05623|SJ16814|SJ19003|SJ03774|SJ03683|SJ03056|SJ19262|SJ01379|SJ10233|SJ08578|SJ20827|SJ04318|SJ05312|SJ10485|SJ02856|SJ07645|SJ01391|SJ03809|SJ16611|SJ02643|SJ17302|SJ05160|SJ05601|SJ21392|SJ04908|SJ11360|SJ08648|SJ01156|SJ14303|SJ02461|SJ05713|SJ20510|SJ13464|SJ14696|SJ21393|SJ21718|SJ11729|SJ11196|SJ16350}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 13:38, 10 January 2019

Reaction RXN-11109

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • RNA helicase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 wound RNA[c] + 1 ATP[c] + 1 H2O[c] => 1 an unwound RNA[c] + 1 ADP[c] + 1 phosphate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links