Difference between revisions of "LYSINE--TRNA-LIGASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6] | ** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6] | ||
| + | * common name: | ||
| + | ** lysine-tRNA ligase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[LYS]][c] '''+''' 1 [[ | + | ** 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 L-lysine[c] '''+''' 1 | + | ** 1 L-lysine[c] '''+''' 1 a tRNALys[c] '''+''' 1 ATP[c] '''=>''' 1 an L-lysyl-[tRNALys][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 39: | Line 39: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20793 20793] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658] | ** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658] | ||
| Line 75: | Line 77: | ||
** [http://www.uniprot.org/uniprot/O30522 O30522] | ** [http://www.uniprot.org/uniprot/O30522 O30522] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-6.1.1.6}} | {{#set: ec number=EC-6.1.1.6}} | ||
| + | {{#set: common name=lysine-tRNA ligase}} | ||
{{#set: gene associated=SJ12237|SJ21008|SJ21009}} | {{#set: gene associated=SJ12237|SJ21008|SJ21009}} | ||
{{#set: in pathway=TRNA-CHARGING-PWY}} | {{#set: in pathway=TRNA-CHARGING-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 11:51, 10 January 2019
Contents
Reaction LYSINE--TRNA-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- lysine-tRNA ligase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 L-lysine[c] + 1 a tRNALys[c] + 1 ATP[c] => 1 an L-lysyl-[tRNALys][c] + 1 diphosphate[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ12237
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ21008
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ21009
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- TRNA-CHARGING-PWY, tRNA charging: TRNA-CHARGING-PWY
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
