Difference between revisions of "RXN-17918"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17918 RXN-17918] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA ligase (ATP) * Synonym(...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** | + | ** 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[A-5-prime-PP-5-prime-DNA]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** | + | ** 1 a [DNA ligase]-N6-(5'-adenylyl)-L-lysine[c] '''+''' 1 a 5'-phospho-[DNA][c] '''+''' 2 H+[c] '''=>''' 1 an adenosine-5'-diphospho-5'-[DNA][c] '''+''' 1 a [DNA ligase]-L-lysine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ15543]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 21: | Line 21: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | * Gene: [[ | + | * Gene: [[SJ19344]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | * Gene: [[ | + | * Gene: [[SJ16080]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 35: | Line 35: | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=DNA ligase (ATP)}} | {{#set: common name=DNA ligase (ATP)}} | ||
| − | {{#set: gene associated= | + | {{#set: gene associated=SJ15543|SJ13521|SJ19344|SJ16080}} |
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 15:27, 10 January 2019
Contents
Reaction RXN-17918
- direction:
- LEFT-TO-RIGHT
- common name:
- DNA ligase (ATP)
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 DNA-Ligase-L-lysine-adenylate[c] + 1 5-Phospho-terminated-DNAs[c] + 2 PROTON[c] => 1 A-5-prime-PP-5-prime-DNA[c] + 1 DNA-Ligase-L-lysine[c]
- With common name(s):
- 1 a [DNA ligase]-N6-(5'-adenylyl)-L-lysine[c] + 1 a 5'-phospho-[DNA][c] + 2 H+[c] => 1 an adenosine-5'-diphospho-5'-[DNA][c] + 1 a [DNA ligase]-L-lysine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ15543
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13521
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19344
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ16080
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
