Difference between revisions of "3-DEHYDROQUINATE-DEHYDRATASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] == * direction: ** REVERSIBLE *...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/4.2.1.10 EC-4.2.1.10] | ** [http://enzyme.expasy.org/EC/4.2.1.10 EC-4.2.1.10] | ||
| + | * common name: | ||
| + | ** 3-dehydroquinate dehydratase | ||
* Synonym(s): | * Synonym(s): | ||
| Line 17: | Line 17: | ||
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ10493]] |
| − | ** Source: [[orthology- | + | ** Source: [[annotation-saccharina_japonica_genome]] |
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ01054]] | * Gene: [[SJ01054]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ08386]] |
| − | ** Source: [[ | + | ** Source: [[orthology-arabidopsis_thaliana]] |
| − | + | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
| − | |||
* Gene: [[SJ13450]] | * Gene: [[SJ13450]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| Line 35: | Line 35: | ||
* [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707] | * [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707] | ||
** '''1''' reactions found over '''3''' reactions in the full pathway | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
| − | |||
| − | |||
| − | |||
| − | |||
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] | ||
** '''6''' reactions found over '''6''' reactions in the full pathway | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-6416]], quinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6416 PWY-6416] | ||
| + | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[QUINATEDEG-PWY]], quinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=QUINATEDEG-PWY QUINATEDEG-PWY] | ||
| + | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 54: | Line 54: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084] | ** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084] | ||
| Line 76: | Line 76: | ||
** [http://www.uniprot.org/uniprot/O65917 O65917] | ** [http://www.uniprot.org/uniprot/O65917 O65917] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| − | |||
{{#set: ec number=EC-4.2.1.10}} | {{#set: ec number=EC-4.2.1.10}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=3-dehydroquinate dehydratase}} |
| − | {{#set: in pathway=PWY-6707| | + | {{#set: gene associated=SJ10493|SJ01054|SJ08386|SJ13450}} |
| + | {{#set: in pathway=PWY-6707|PWY-6163|PWY-6416|QUINATEDEG-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:28, 10 January 2019
Contents
Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- 3-dehydroquinate dehydratase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 DEHYDROQUINATE[c] <=> 1 WATER[c] + 1 3-DEHYDRO-SHIKIMATE[c]
- With common name(s):
- 1 3-dehydroquinate[c] <=> 1 H2O[c] + 1 3-dehydroshikimate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ10493
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ01054
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08386
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ13450
- Source: orthology-ectocarpus_siliculosus
Pathways
- PWY-6707, gallate biosynthesis: PWY-6707
- 1 reactions found over 3 reactions in the full pathway
- PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
- 6 reactions found over 6 reactions in the full pathway
- PWY-6416, quinate degradation II: PWY-6416
- 1 reactions found over 3 reactions in the full pathway
- QUINATEDEG-PWY, quinate degradation I: QUINATEDEG-PWY
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
