Difference between revisions of "AGMATINE-DEIMINASE-RXN"

Revision as of 12:16, 18 May 2018

Reaction AGMATINE-DEIMINASE-RXN

• direction:
  • LEFT-TO-RIGHT
• common name:
  • agmatine deaminase
• ec number:
  • EC-3.5.3.12
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 AGMATHINE[c] + 1 WATER[c] => 1 CPD-597[c] + 1 AMMONIUM[c]
• With common name(s):
  • 1 agmatine[c] + 1 H2O[c] => 1 N-carbamoylputrescine[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: SJ16434
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-nannochloropsis_salina

Pathways

• PWY-43, putrescine biosynthesis II: PWY-43
  • 3 reactions found over 3 reactions in the full pathway
• ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
  • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
• Category: annotation
  • Source: annotation-saccharina_japonica_genome
    • Tool: pathwaytools

External links

• RHEA:
  • 18038
• LIGAND-RXN:
  • R01416