Difference between revisions of "DNA-LIGASE-ATP-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA ligas...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7] | ** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7] | ||
** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1] | ** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1] | ||
** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6] | ** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6] | ||
| + | * common name: | ||
| + | ** DNA ligase (ATP) | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[ATP]][c] '''+''' 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[DNA-N]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 ATP[c] '''+''' 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 DNAn[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 66: | Line 66: | ||
** [http://www.uniprot.org/uniprot/P20492 P20492] | ** [http://www.uniprot.org/uniprot/P20492 P20492] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-6.5.1.7}} | {{#set: ec number=EC-6.5.1.7}} | ||
{{#set: ec number=EC-6.5.1.1}} | {{#set: ec number=EC-6.5.1.1}} | ||
{{#set: ec number=EC-6.5.1.6}} | {{#set: ec number=EC-6.5.1.6}} | ||
| + | {{#set: common name=DNA ligase (ATP)}} | ||
{{#set: gene associated=SJ13521|SJ15543|SJ16080}} | {{#set: gene associated=SJ13521|SJ15543|SJ16080}} | ||
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 11:40, 10 January 2019
Contents
Reaction DNA-LIGASE-ATP-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- DNA ligase (ATP)
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ATP[c] + 1 3-Hydroxy-Terminated-DNAs[c] + 1 5-Phospho-terminated-DNAs[c] => 1 DNA-N[c] + 1 AMP[c] + 1 PPI[c]
- With common name(s):
- 1 ATP[c] + 1 a [DNA]-3'-hydroxyl[c] + 1 a 5'-phospho-[DNA][c] => 1 DNAn[c] + 1 AMP[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ13521
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ15543
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ16080
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- LIGAND-RXN:
- UNIPROT:
