Difference between revisions of "1.1.1.39-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrogenase...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
 +
** [http://enzyme.expasy.org/EC/1.1.1.39 EC-1.1.1.39]
 
* common name:
 
* common name:
 
** malate dehydrogenase (decarboxylating) (NAD+)
 
** malate dehydrogenase (decarboxylating) (NAD+)
 
** oxaloacetate decarboxylase
 
** oxaloacetate decarboxylase
 
** malate dehydrogenase, NAD-requiring
 
** malate dehydrogenase, NAD-requiring
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
 
−
** [http://enzyme.expasy.org/EC/1.1.1.39 EC-1.1.1.39]
 
 
* Synonym(s):
 
* Synonym(s):
  
Line 20: Line 20:
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ14191]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
* Gene: [[SJ13180]]
 
* Gene: [[SJ13180]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
Line 30: Line 26:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ14191]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
 
* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
+
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
 
* [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686]
 
* [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
Line 53: Line 53:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12653 12653]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
Line 70: Line 70:
 
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-1.1.1.38}}
 +
{{#set: ec number=EC-1.1.1.39}}
 
{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
 
{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
 
{{#set: common name=oxaloacetate decarboxylase}}
 
{{#set: common name=oxaloacetate decarboxylase}}
 
{{#set: common name=malate dehydrogenase, NAD-requiring}}
 
{{#set: common name=malate dehydrogenase, NAD-requiring}}
−
{{#set: ec number=EC-1.1.1.38}}
+
{{#set: gene associated=SJ13180|SJ11643|SJ14191}}
−
{{#set: ec number=EC-1.1.1.39}}
+
{{#set: in pathway=PWY-7384|PWY-7115|PWY-3641|GLUCONEO-PWY|PWY-7686|PWY-7118}}
−
{{#set: gene associated=SJ14191|SJ13180|SJ11643}}
+
−
{{#set: in pathway=PWY-3641|GLUCONEO-PWY|PWY-7384|PWY-7686|PWY-7115|PWY-7118}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:42, 10 January 2019

Reaction 1.1.1.39-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • malate dehydrogenase (decarboxylating) (NAD+)
    • oxaloacetate decarboxylase
    • malate dehydrogenase, NAD-requiring
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-malate[c] + 1 NAD+[c] => 1 pyruvate[c] + 1 CO2[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-3641, L-carnitine degradation III: PWY-3641
    • 2 reactions found over 3 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7686, L-malate degradation II: PWY-7686
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=1.1.1.39-RXN&oldid=13807"