Difference between revisions of "APIGNAR-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6] | ||
* common name: | * common name: | ||
** Naringenin chalcone isomerase | ** Naringenin chalcone isomerase | ||
** chalcone isomerase | ** chalcone isomerase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 naringenin chalcone[c] '''=>''' 1 (2S)-naringenin[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 27: | Line 27: | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] | * [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] | ||
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-7897]], flavonoid di-C-glucosylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7897 PWY-7897] | ||
| + | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
| + | * [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787] | * [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787] | ||
** '''6''' reactions found over '''10''' reactions in the full pathway | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
| Line 58: | Line 60: | ||
** [http://www.uniprot.org/uniprot/Q43754 Q43754] | ** [http://www.uniprot.org/uniprot/Q43754 Q43754] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: ec number=EC-5.5.1.6}} | ||
{{#set: common name=Naringenin chalcone isomerase}} | {{#set: common name=Naringenin chalcone isomerase}} | ||
{{#set: common name=chalcone isomerase}} | {{#set: common name=chalcone isomerase}} | ||
| − | |||
{{#set: gene associated=SJ09285|SJ20427}} | {{#set: gene associated=SJ09285|SJ20427}} | ||
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY1F-FLAVSYN|PWY-7897|PWY-7397|PWY-6787}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 11:44, 10 January 2019
Contents
Reaction APIGNAR-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- Naringenin chalcone isomerase
- chalcone isomerase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD-20012[c] => 1 NARINGENIN-CMPD[c]
- With common name(s):
- 1 naringenin chalcone[c] => 1 (2S)-naringenin[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ09285
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ20427
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-7897, flavonoid di-C-glucosylation: PWY-7897
- 3 reactions found over 15 reactions in the full pathway
- PWY-7397, naringenin biosynthesis (engineered): PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
- 6 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- LIGAND-RXN:
- UNIPROT:
