Difference between revisions of "RXN-9679"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9679 RXN-9679] == * direction: ** LEFT-TO-RIGHT * common name: ** sarcosine N-methyltransferase...")
 
 
Line 22: Line 22:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SARCOSINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 sarcosine[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 dimethylglycine[c]
+
** 1 S-adenosyl-L-methionine[c] '''+''' 1 sarcosine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 N,N-dimethylglycine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ12118]]
+
* Gene: [[SJ11087]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ12128]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 37: Line 40:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ12128]]
+
* Gene: [[SJ14716]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ10116]]
+
* Gene: [[SJ12119]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ11087]]
+
* Gene: [[SJ10116]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 52: Line 55:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ12119]]
+
* Gene: [[SJ18177]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ14716]]
+
* Gene: [[SJ12118]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ18177]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY]
 
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
Line 72: Line 72:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15453 15453]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
 
** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
Line 79: Line 79:
 
{{#set: common name=sarcosine-dimethylglycine methyltransferase}}
 
{{#set: common name=sarcosine-dimethylglycine methyltransferase}}
 
{{#set: common name=S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase|sarcosine dimethylglycine N-methyltransferase|SDMT|ApDMT|ApGSMT|glycine-sarcosine methyltransferase|GSMT|GMT|glycine sarcosine N-methyltransferase|S-adenosyl-L-methionine:sarcosine N-methyltransferase|GSDMT|glycine sarcosine dimethylglycine N-methyltransferase}}
 
{{#set: common name=S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase|sarcosine dimethylglycine N-methyltransferase|SDMT|ApDMT|ApGSMT|glycine-sarcosine methyltransferase|GSMT|GMT|glycine sarcosine N-methyltransferase|S-adenosyl-L-methionine:sarcosine N-methyltransferase|GSDMT|glycine sarcosine dimethylglycine N-methyltransferase}}
−
{{#set: gene associated=SJ12118|SJ02540|SJ02539|SJ12128|SJ10116|SJ11087|SJ12116|SJ03081|SJ12119|SJ14716|SJ18177}}
+
{{#set: gene associated=SJ11087|SJ12128|SJ02540|SJ02539|SJ14716|SJ12119|SJ10116|SJ12116|SJ03081|SJ18177|SJ12118}}
−
{{#set: in pathway=PWY-6004|P541-PWY}}
+
{{#set: in pathway=P541-PWY|PWY-6004}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 11:44, 10 January 2019

Reaction RXN-9679

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • sarcosine N-methyltransferase
    • sarcosine-dimethylglycine methyltransferase
  • Synonym(s):
    • S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase
    • sarcosine dimethylglycine N-methyltransferase
    • SDMT
    • ApDMT
    • ApGSMT
    • glycine-sarcosine methyltransferase
    • GSMT
    • GMT
    • glycine sarcosine N-methyltransferase
    • S-adenosyl-L-methionine:sarcosine N-methyltransferase
    • GSDMT
    • glycine sarcosine dimethylglycine N-methyltransferase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P541-PWY, glycine betaine biosynthesis IV (from glycine): P541-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine): PWY-6004
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-9679&oldid=13855"