Difference between revisions of "ASPAMINOTRANS-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** aspartate tran...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1] | ||
* common name: | * common name: | ||
** aspartate transaminase | ** aspartate transaminase | ||
** L-phenylalanine:2-oxoglutarate aminotransferase | ** L-phenylalanine:2-oxoglutarate aminotransferase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[GLT]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 oxaloacetate[c] '''+''' 1 L-glutamate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
* Gene: [[SJ08678]] | * Gene: [[SJ08678]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ05778]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| − | *** Assignment: | + | *** Assignment: EC-NUMBER |
| − | + | ** Source: [[orthology-ectocarpus_siliculosus]] | |
| − | ** Source: [[ | + | |
| − | + | ||
* Gene: [[SJ07646]] | * Gene: [[SJ07646]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | * Gene: [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
| + | * Gene: [[SJ04188]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| − | *** Assignment: | + | *** Assignment: GO-TERM |
| − | ** Source: [[ | + | * Gene: [[SJ20943]] |
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
== Pathways == | == Pathways == | ||
| − | * [[PWY- | + | * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] |
| − | ** '''10''' reactions found over ''' | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY] | * [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY] | ||
** '''1''' reactions found over '''1''' reactions in the full pathway | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY] | * [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY] | ||
** '''1''' reactions found over '''1''' reactions in the full pathway | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
| − | |||
| − | |||
| − | |||
| − | |||
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] | * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] | ||
** '''9''' reactions found over '''9''' reactions in the full pathway | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY] | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
| + | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1] | * [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1] | ||
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383] | ||
| + | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 70: | Line 70: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21827 21827] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355] | ** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355] | ||
| Line 156: | Line 156: | ||
** [http://www.uniprot.org/uniprot/P26563 P26563] | ** [http://www.uniprot.org/uniprot/P26563 P26563] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| + | {{#set: ec number=EC-2.6.1.1}} | ||
{{#set: common name=aspartate transaminase}} | {{#set: common name=aspartate transaminase}} | ||
{{#set: common name=L-phenylalanine:2-oxoglutarate aminotransferase}} | {{#set: common name=L-phenylalanine:2-oxoglutarate aminotransferase}} | ||
| − | + | {{#set: gene associated=SJ08678|SJ05778|SJ07646|SJ04188|SJ20943}} | |
| − | {{#set: gene associated=SJ08678| | + | {{#set: in pathway=PWY-7117|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-7115|GLUTDEG-PWY|PWY-5913|ASPARAGINE-DEG1-PWY-1|PWY-7383|MALATE-ASPARTATE-SHUTTLE-PWY}} |
| − | {{#set: in pathway=PWY- | + | |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=orthology-arabidopsis_thaliana| | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 10:51, 10 January 2019
Contents
Reaction ASPAMINOTRANS-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- aspartate transaminase
- L-phenylalanine:2-oxoglutarate aminotransferase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 L-ASPARTATE[c] + 1 2-KETOGLUTARATE[c] <=> 1 OXALACETIC_ACID[c] + 1 GLT[c]
- With common name(s):
- 1 L-aspartate[c] + 1 2-oxoglutarate[c] <=> 1 oxaloacetate[c] + 1 L-glutamate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ08678
- Source: orthology-ectocarpus_siliculosus
- Gene: SJ05778
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07646
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ04188
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ20943
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
- 10 reactions found over 10 reactions in the full pathway
- ASPARTATE-DEG1-PWY, L-aspartate degradation I: ASPARTATE-DEG1-PWY
- 1 reactions found over 1 reactions in the full pathway
- ASPARTATESYN-PWY, L-aspartate biosynthesis: ASPARTATESYN-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
- 9 reactions found over 9 reactions in the full pathway
- GLUTDEG-PWY, L-glutamate degradation II: GLUTDEG-PWY
- 1 reactions found over 2 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- ASPARAGINE-DEG1-PWY-1, L-asparagine degradation III (mammalian): ASPARAGINE-DEG1-PWY-1
- 3 reactions found over 3 reactions in the full pathway
- PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
- 4 reactions found over 7 reactions in the full pathway
- MALATE-ASPARTATE-SHUTTLE-PWY, L-aspartate degradation II: MALATE-ASPARTATE-SHUTTLE-PWY
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- Q7LZ21
- P08906
- P12343
- Q06191
- Q02635
- Q60317
- O28151
- O67781
- P08907
- P12345
- Q9X0Y2
- Q9PPF7
- Q9JVS3
- P53001
- P96847
- Q9K0P5
- Q9X224
- Q9Y9P0
- Q9RWP3
- O66737
- O28650
- O30304
- Q9CEK7
- O27916
- O05237
- Q9YE99
- O25383
- O27638
- O96142
- Q9ZLG5
- P00507
- P44425
- Q59569
- Q59197
- P37833
- O48599
- O33822
- P05201
- P05202
- P14909
- P17174
- P33097
- Q43057
- Q43305
- Q42794
- P12344
- Q01802
- Q40325
- P36692
- P28011
- Q42391
- Q9L0L5
- Q53951
- Q42803
- Q42425
- Q55128
- P72859
- Q55453
- Q55679
- O48598
- Q42991
- P46248
- O48548
- Q60013
- P28734
- Q17994
- Q17983
- Q22066
- Q22067
- O01804
- O54170
- O42652
- O94320
- P46644
- P00504
- P00508
- P00509
- P00505
- P00503
- P00506
- P26563
