Difference between revisions of "DALADALALIG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DALADALALIG-RXN DALADALALIG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** D-alanine-D-ala...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** D-alanine-D-alanine ligase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.3.2.4 EC-6.3.2.4]
 
** [http://enzyme.expasy.org/EC/6.3.2.4 EC-6.3.2.4]
 +
* common name:
 +
** D-alanine-D-alanine ligase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[D-ALANINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[D-ALA-D-ALA]][c]
+
** 2 [[D-ALANINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 D-alanine[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 D-alanyl-D-alanine[c]
+
** 2 D-alanine[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 D-alanyl-D-alanine[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ12870]]
+
* Gene: [[SJ06726]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[SJ02214]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 29: Line 26:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ06726]]
+
* Gene: [[SJ02214]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ12870]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
 
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
 
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7953 PWY-7953]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/Q9RLE4 Q9RLE4]
 
** [http://www.uniprot.org/uniprot/Q9RLE4 Q9RLE4]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=D-alanine-D-alanine ligase}}
 
 
{{#set: ec number=EC-6.3.2.4}}
 
{{#set: ec number=EC-6.3.2.4}}
−
{{#set: gene associated=SJ12870|SJ02214|SJ17851|SJ12670|SJ06726}}
+
{{#set: common name=D-alanine-D-alanine ligase}}
−
{{#set: in pathway=PWY-6386|PWY-6387}}
+
{{#set: gene associated=SJ06726|SJ17851|SJ12670|SJ02214|SJ12870}}
 +
{{#set: in pathway=PWY-6387|PWY-7953|PWY-6386}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 11:05, 10 January 2019

Reaction DALADALALIG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • D-alanine-D-alanine ligase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 D-alanine[c] + 1 ATP[c] => 1 H+[c] + 1 D-alanyl-D-alanine[c] + 1 phosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): PWY-6387
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-7953, UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing): PWY-7953
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6386, UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): PWY-6386
    • 2 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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