Difference between revisions of "PWY-1861"
From metabolic_network
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...") |
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] | ||
* common name: | * common name: | ||
| − | ** formaldehyde assimilation II (RuMP Cycle) | + | ** formaldehyde assimilation II (assimilatory RuMP Cycle) |
* Synonym(s): | * Synonym(s): | ||
** ribulose monophosphate cycle | ** ribulose monophosphate cycle | ||
** formaldehyde assimilation | ** formaldehyde assimilation | ||
| − | ** RuMP pathway | + | ** assimilatory RuMP pathway |
== Reaction(s) found == | == Reaction(s) found == | ||
| Line 14: | Line 14: | ||
* [[1TRANSKETO-RXN]] | * [[1TRANSKETO-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
| − | |||
*** [[SJ12529]] | *** [[SJ12529]] | ||
| + | *** [[SJ12026]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[2TRANSKETO-RXN]] | * [[2TRANSKETO-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
| − | |||
*** [[SJ12026]] | *** [[SJ12026]] | ||
| + | *** [[SJ12529]] | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-nannochloropsis_salina]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[6PFRUCTPHOS-RXN]] | * [[6PFRUCTPHOS-RXN]] | ||
** 3 associated gene(s): | ** 3 associated gene(s): | ||
| + | *** [[SJ16394]] | ||
*** [[SJ02434]] | *** [[SJ02434]] | ||
*** [[SJ04582]] | *** [[SJ04582]] | ||
| − | |||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-nannochloropsis_salina]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[F16ALDOLASE-RXN]] | * [[F16ALDOLASE-RXN]] | ||
** 5 associated gene(s): | ** 5 associated gene(s): | ||
| − | |||
*** [[SJ22520]] | *** [[SJ22520]] | ||
*** [[SJ12479]] | *** [[SJ12479]] | ||
| − | |||
*** [[SJ13560]] | *** [[SJ13560]] | ||
| + | *** [[SJ17964]] | ||
| + | *** [[SJ21513]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
| − | |||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-nannochloropsis_salina]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[RIB5PISOM-RXN]] | * [[RIB5PISOM-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
| Line 56: | Line 56: | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[RIBULP3EPIM-RXN]] | * [[RIBULP3EPIM-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
| Line 64: | Line 64: | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-nannochloropsis_salina]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[TRANSALDOL-RXN]] | * [[TRANSALDOL-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
| Line 73: | Line 73: | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
| − | |||
| − | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
| + | *** [[orthology-nannochloropsis_salina]] | ||
| + | *** [[orthology-ectocarpus_siliculosus]] | ||
== Reaction(s) not found == | == Reaction(s) not found == | ||
* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN] | * [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN] | ||
| Line 81: | Line 81: | ||
== External links == | == External links == | ||
{{#set: taxonomic range=TAX-2}} | {{#set: taxonomic range=TAX-2}} | ||
| − | {{#set: common name=formaldehyde assimilation II (RuMP Cycle)}} | + | {{#set: common name=formaldehyde assimilation II (assimilatory RuMP Cycle)}} |
| − | {{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|RuMP pathway}} | + | {{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|assimilatory RuMP pathway}} |
{{#set: reaction found=7}} | {{#set: reaction found=7}} | ||
{{#set: total reaction=9}} | {{#set: total reaction=9}} | ||
{{#set: completion rate=78.0}} | {{#set: completion rate=78.0}} | ||
Latest revision as of 12:14, 10 January 2019
Pathway PWY-1861
- taxonomic range:
- common name:
- formaldehyde assimilation II (assimilatory RuMP Cycle)
- Synonym(s):
- ribulose monophosphate cycle
- formaldehyde assimilation
- assimilatory RuMP pathway
Reaction(s) found
7 reactions found over 9 reactions in the full pathway
- 1TRANSKETO-RXN
- 2 associated gene(s):
- 3 reconstruction source(s) associated:
- 2TRANSKETO-RXN
- 2 associated gene(s):
- 4 reconstruction source(s) associated:
- 6PFRUCTPHOS-RXN
- 3 associated gene(s):
- 4 reconstruction source(s) associated:
- F16ALDOLASE-RXN
- 5 associated gene(s):
- 3 reconstruction source(s) associated:
- RIB5PISOM-RXN
- 2 associated gene(s):
- 3 reconstruction source(s) associated:
- RIBULP3EPIM-RXN
- 2 associated gene(s):
- 4 reconstruction source(s) associated:
- TRANSALDOL-RXN
- 2 associated gene(s):
- 4 reconstruction source(s) associated:
