Difference between revisions of "CALVIN-PWY"
From metabolic_network
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TA...") |
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== Reaction(s) found == | == Reaction(s) found == | ||
− | ''' | + | '''12''' reactions found over '''13''' reactions in the full pathway |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
* [[1TRANSKETO-RXN]] | * [[1TRANSKETO-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
+ | *** [[SJ12529]] | ||
*** [[SJ12026]] | *** [[SJ12026]] | ||
− | |||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
+ | *** [[annotation-saccharina_japonica_genome]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
− | |||
* [[2TRANSKETO-RXN]] | * [[2TRANSKETO-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
+ | *** [[SJ12026]] | ||
*** [[SJ12529]] | *** [[SJ12529]] | ||
− | |||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
+ | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
− | |||
− | |||
* [[F16ALDOLASE-RXN]] | * [[F16ALDOLASE-RXN]] | ||
** 5 associated gene(s): | ** 5 associated gene(s): | ||
− | |||
*** [[SJ22520]] | *** [[SJ22520]] | ||
*** [[SJ12479]] | *** [[SJ12479]] | ||
+ | *** [[SJ13560]] | ||
*** [[SJ17964]] | *** [[SJ17964]] | ||
− | *** [[ | + | *** [[SJ21513]] |
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
+ | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
− | |||
− | |||
* [[F16BDEPHOS-RXN]] | * [[F16BDEPHOS-RXN]] | ||
** 7 associated gene(s): | ** 7 associated gene(s): | ||
+ | *** [[SJ14175]] | ||
+ | *** [[SJ16950]] | ||
+ | *** [[SJ17320]] | ||
+ | *** [[SJ13518]] | ||
*** [[SJ14821]] | *** [[SJ14821]] | ||
*** [[SJ10463]] | *** [[SJ10463]] | ||
− | |||
− | |||
− | |||
*** [[SJ20807]] | *** [[SJ20807]] | ||
− | |||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
+ | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[PHOSGLYPHOS-RXN]] | * [[PHOSGLYPHOS-RXN]] | ||
** 6 associated gene(s): | ** 6 associated gene(s): | ||
− | |||
− | |||
− | |||
*** [[SJ15992]] | *** [[SJ15992]] | ||
− | *** [[ | + | *** [[SJ05024]] |
*** [[SJ15991]] | *** [[SJ15991]] | ||
+ | *** [[SJ18020]] | ||
+ | *** [[SJ15971]] | ||
+ | *** [[SJ10780]] | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
+ | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[PHOSPHORIBULOKINASE-RXN]] | * [[PHOSPHORIBULOKINASE-RXN]] | ||
** 1 associated gene(s): | ** 1 associated gene(s): | ||
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** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
+ | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[RIB5PISOM-RXN]] | * [[RIB5PISOM-RXN]] | ||
** 2 associated gene(s): | ** 2 associated gene(s): | ||
Line 106: | Line 102: | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
− | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]] | * [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]] | ||
** 1 associated gene(s): | ** 1 associated gene(s): | ||
Line 119: | Line 115: | ||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
+ | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[SEDOBISALDOL-RXN]] | * [[SEDOBISALDOL-RXN]] | ||
** 1 associated gene(s): | ** 1 associated gene(s): | ||
Line 130: | Line 126: | ||
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]] | * [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]] | ||
** 3 associated gene(s): | ** 3 associated gene(s): | ||
− | |||
*** [[SJ10463]] | *** [[SJ10463]] | ||
+ | *** [[SJ17320]] | ||
*** [[SJ16950]] | *** [[SJ16950]] | ||
** 3 reconstruction source(s) associated: | ** 3 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
− | |||
*** [[annotation-saccharina_japonica_genome]] | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-ectocarpus_siliculosus]] | ||
* [[TRIOSEPISOMERIZATION-RXN]] | * [[TRIOSEPISOMERIZATION-RXN]] | ||
** 5 associated gene(s): | ** 5 associated gene(s): | ||
+ | *** [[SJ10351]] | ||
+ | *** [[SJ11011]] | ||
*** [[SJ15388]] | *** [[SJ15388]] | ||
*** [[SJ07665]] | *** [[SJ07665]] | ||
− | |||
*** [[SJ21027]] | *** [[SJ21027]] | ||
− | |||
** 4 reconstruction source(s) associated: | ** 4 reconstruction source(s) associated: | ||
*** [[orthology-arabidopsis_thaliana]] | *** [[orthology-arabidopsis_thaliana]] | ||
+ | *** [[annotation-saccharina_japonica_genome]] | ||
+ | *** [[orthology-nannochloropsis_salina]] | ||
*** [[orthology-ectocarpus_siliculosus]] | *** [[orthology-ectocarpus_siliculosus]] | ||
− | |||
− | |||
== Reaction(s) not found == | == Reaction(s) not found == | ||
+ | * [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] | ||
== External links == | == External links == | ||
− | |||
* ARACYC: | * ARACYC: | ||
** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] | ** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] | ||
+ | * PLANTCYC : CALVIN-PWY | ||
{{#set: taxonomic range=TAX-1117}} | {{#set: taxonomic range=TAX-1117}} | ||
{{#set: taxonomic range=TAX-39119}} | {{#set: taxonomic range=TAX-39119}} | ||
Line 175: | Line 172: | ||
{{#set: common name=Calvin-Benson-Bassham cycle}} | {{#set: common name=Calvin-Benson-Bassham cycle}} | ||
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}} | {{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}} | ||
− | {{#set: reaction found= | + | {{#set: reaction found=12}} |
{{#set: total reaction=13}} | {{#set: total reaction=13}} | ||
− | {{#set: completion rate= | + | {{#set: completion rate=92.0}} |
Latest revision as of 12:15, 10 January 2019
Pathway CALVIN-PWY
- taxonomic range:
- common name:
- Calvin-Benson-Bassham cycle
- Synonym(s):
- photosynthetic dark reactions
- photosynthetic CO2 fixation
- reductive pentose phosphate pathway
- Calvin cycle
- carbon fixation
- Calvin-Benson cycle
Reaction(s) found
12 reactions found over 13 reactions in the full pathway
- 1TRANSKETO-RXN
- 2 associated gene(s):
- 3 reconstruction source(s) associated:
- 2TRANSKETO-RXN
- 2 associated gene(s):
- 4 reconstruction source(s) associated:
- F16ALDOLASE-RXN
- 5 associated gene(s):
- 3 reconstruction source(s) associated:
- F16BDEPHOS-RXN
- 7 associated gene(s):
- 4 reconstruction source(s) associated:
- PHOSGLYPHOS-RXN
- 6 associated gene(s):
- 4 reconstruction source(s) associated:
- PHOSPHORIBULOKINASE-RXN
- 1 associated gene(s):
- 4 reconstruction source(s) associated:
- RIB5PISOM-RXN
- 2 associated gene(s):
- 3 reconstruction source(s) associated:
- RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN
- 1 associated gene(s):
- 1 reconstruction source(s) associated:
- RIBULP3EPIM-RXN
- 2 associated gene(s):
- 4 reconstruction source(s) associated:
- SEDOBISALDOL-RXN
- 1 associated gene(s):
- 2 reconstruction source(s) associated:
- SEDOHEPTULOSE-BISPHOSPHATASE-RXN
- 3 associated gene(s):
- 3 reconstruction source(s) associated:
- TRIOSEPISOMERIZATION-RXN
- 5 associated gene(s):
- 4 reconstruction source(s) associated:
Reaction(s) not found
External links
- ARACYC:
- PLANTCYC : CALVIN-PWY