Difference between revisions of "RXN-1404"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
 
 
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== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[WATER]][c] '''+''' 1 [[INDOLEYL-CPD]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
+
** 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[INDOLE_ACETATE_AUXIN]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 H2O[c] '''+''' 1 indole-3-acetonitrile[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
+
** 1 (indole-3-yl)acetonitrile[c] '''+''' 2 H2O[c] '''=>''' 1 (indol-3-yl)acetate[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ14362]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
* Gene: [[SJ02846]]
 
* Gene: [[SJ02846]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ14362]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476]
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
 
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
 
** '''5''' reactions found over '''13''' reactions in the full pathway
 
** '''5''' reactions found over '''13''' reactions in the full pathway
 
* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026]
 
* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476]
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=45777 45777]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
 
** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: ec number=EC-3.5.5.1}}
 
{{#set: ec number=EC-3.5.5.1}}
−
{{#set: gene associated=SJ14362|SJ02846}}
+
{{#set: gene associated=SJ02846|SJ14362}}
−
{{#set: in pathway=PWY-581|PWY-5026|PWYQT-4476}}
+
{{#set: in pathway=PWYQT-4476|PWY-581|PWY-5026}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 11:17, 10 January 2019

Reaction RXN-1404

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYQT-4476, indole glucosinolate activation (herbivore attack): PWYQT-4476
    • 1 reactions found over 13 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi): PWY-5026
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-1404&oldid=14913"