Difference between revisions of "GDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate ki...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* common name:
 
* common name:
 
** nucleoside diphosphate kinase
 
** nucleoside diphosphate kinase
 
** GDP kinase
 
** GDP kinase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
 
* Synonym(s):
 
* Synonym(s):
  
Line 18: Line 18:
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ07124]]
+
* Gene: [[SJ08159]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-arabidopsis_thaliana]]
+
* Gene: [[SJ20794]]
−
* Gene: [[SJ21816]]
+
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ20076]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ10125]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ21967]]
 
* Gene: [[SJ21967]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ08159]]
+
* Gene: [[SJ21816]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ21705]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ20076]]
+
* Gene: [[SJ07124]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ16893]]
 
* Gene: [[SJ16893]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-arabidopsis_thaliana]]
+
* Gene: [[SJ21705]]
−
* Gene: [[SJ20794]]
+
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[SJ10125]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-nannochloropsis_salina]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 72: Line 72:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27687 27687]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-2.7.4.6}}
 
{{#set: common name=nucleoside diphosphate kinase}}
 
{{#set: common name=nucleoside diphosphate kinase}}
 
{{#set: common name=GDP kinase}}
 
{{#set: common name=GDP kinase}}
−
{{#set: ec number=EC-2.7.4.6}}
+
{{#set: gene associated=SJ08159|SJ20794|SJ20076|SJ10125|SJ21967|SJ21816|SJ07124|SJ16893|SJ21705}}
−
{{#set: gene associated=SJ07124|SJ21816|SJ21967|SJ08159|SJ21705|SJ20076|SJ16893|SJ20794|SJ10125}}
+
{{#set: in pathway=PPGPPMET-PWY|PWY-7221}}
−
{{#set: in pathway=PWY-7221|PPGPPMET-PWY}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 11:25, 10 January 2019

Reaction GDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • nucleoside diphosphate kinase
    • GDP kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP[c] + 1 ATP[c] => 1 GTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=GDPKIN-RXN&oldid=15169"