Difference between revisions of "RXN-10780"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10780 RXN-10780] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxyindole acetaldehyd...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 5-hydroxyindole acetaldehyde dehydrogenase
 
−
** aldehyde dehydrogenase (NAD)
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3]
 
** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3]
 +
* common name:
 +
** aldehyde dehydrogenase (NAD)
 +
** 5-hydroxyindole acetaldehyde dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[5-HYDROXYINDOLE_ACETATE]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[5-HYDROXYINDOLE_ACETATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 5-hydroxyindole acetaldehyde[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 5-hydroxyindole acetate[c] '''+''' 2 H+[c]
+
** 1 5-hydroxyindole acetaldehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 5-hydroxyindole acetate[c] '''+''' 1 NADH[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ22552]]
+
* Gene: [[SJ06470]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ06359]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
* Gene: [[SJ06047]]
 
* Gene: [[SJ06047]]
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[SJ11330]]
 
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
* Gene: [[SJ09287]]
 
* Gene: [[SJ09287]]
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[SJ06359]]
 
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 37: Line 36:
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ06470]]
+
* Gene: [[SJ10107]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ22552]]
−
** Source: [[orthology-arabidopsis_thaliana]]
+
** Source: [[annotation-saccharina_japonica_genome]]
−
* Gene: [[SJ11331]]
+
*** Assignment: GO-TERM
 +
* Gene: [[SJ17249]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
* Gene: [[SJ00435]]
 
* Gene: [[SJ00435]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ10107]]
+
* Gene: [[SJ11330]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 55: Line 54:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
* Gene: [[SJ17249]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ11331]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-6313]], serotonin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313]
 
* [[PWY-6313]], serotonin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 74: Line 74:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31215 31215]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31216 31216]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04903 R04903]
 
** [http://www.genome.jp/dbget-bin/www_bget?R04903 R04903]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5-hydroxyindole acetaldehyde dehydrogenase}}
 
−
{{#set: common name=aldehyde dehydrogenase (NAD)}}
 
 
{{#set: ec number=EC-1.2.1.3}}
 
{{#set: ec number=EC-1.2.1.3}}
−
{{#set: gene associated=SJ22552|SJ06047|SJ11330|SJ09287|SJ06359|SJ05897|SJ06470|SJ11331|SJ00435|SJ10107|SJ06456|SJ17249}}
+
{{#set: common name=aldehyde dehydrogenase (NAD)}}
 +
{{#set: common name=5-hydroxyindole acetaldehyde dehydrogenase}}
 +
{{#set: gene associated=SJ06470|SJ06359|SJ06047|SJ09287|SJ05897|SJ10107|SJ22552|SJ17249|SJ00435|SJ11330|SJ06456|SJ11331}}
 
{{#set: in pathway=PWY-6313}}
 
{{#set: in pathway=PWY-6313}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 12:33, 10 January 2019

Reaction RXN-10780

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • aldehyde dehydrogenase (NAD)
    • 5-hydroxyindole acetaldehyde dehydrogenase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6313, serotonin degradation: PWY-6313
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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