Difference between revisions of "RXN-16389"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] == * direction: ** LEFT-TO-RIGHT * common name: ** 16-hydroxypalmitoyl-CoA syn...") |
|||
Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3] | ||
* common name: | * common name: | ||
** 16-hydroxypalmitoyl-CoA synthetase | ** 16-hydroxypalmitoyl-CoA synthetase | ||
** long-chain fatty acid-CoA ligase | ** long-chain fatty acid-CoA ligase | ||
− | |||
− | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[16-HYDROXYPALMITATE]][c] '''=>''' 1 [[ | + | ** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[16-HYDROXYPALMITATE]][c] '''=>''' 1 [[CPD-17621]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 16-hydroxypalmitate[c] '''=>''' 1 | + | ** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 16-hydroxypalmitate[c] '''=>''' 1 16-hydroxypalmitoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[SJ08690]] | ||
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
* Gene: [[SJ03650]] | * Gene: [[SJ03650]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
− | * Gene: [[ | + | * Gene: [[SJ13972]] |
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[SJ08692]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
Line 28: | Line 35: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | |||
− | |||
− | |||
− | |||
* Gene: [[SJ08691]] | * Gene: [[SJ08691]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
− | |||
− | |||
− | |||
== Pathways == | == Pathways == | ||
− | |||
− | |||
* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733] | * [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733] | ||
** '''8''' reactions found over '''18''' reactions in the full pathway | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321] | ||
+ | ** '''3''' reactions found over '''16''' reactions in the full pathway | ||
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121] | * [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121] | ||
** '''9''' reactions found over '''19''' reactions in the full pathway | ** '''9''' reactions found over '''19''' reactions in the full pathway | ||
Line 55: | Line 55: | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
+ | {{#set: ec number=EC-6.2.1.3}} | ||
{{#set: common name=16-hydroxypalmitoyl-CoA synthetase}} | {{#set: common name=16-hydroxypalmitoyl-CoA synthetase}} | ||
{{#set: common name=long-chain fatty acid-CoA ligase}} | {{#set: common name=long-chain fatty acid-CoA ligase}} | ||
− | + | {{#set: gene associated=SJ08690|SJ03650|SJ13972|SJ08692|SJ05591|SJ08691}} | |
− | {{#set: gene associated=SJ03650| | + | {{#set: in pathway=PWY-6733|PWY-321|PWY-1121}} |
− | {{#set: in pathway=PWY- | + | |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 12:40, 10 January 2019
Contents
Reaction RXN-16389
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- 16-hydroxypalmitoyl-CoA synthetase
- long-chain fatty acid-CoA ligase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 coenzyme A[c] + 1 ATP[c] + 1 16-hydroxypalmitate[c] => 1 16-hydroxypalmitoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ08690
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ03650
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13972
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08692
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05591
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08691
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6733, sporopollenin precursors biosynthesis: PWY-6733
- 8 reactions found over 18 reactions in the full pathway
- PWY-321, cutin biosynthesis: PWY-321
- 3 reactions found over 16 reactions in the full pathway
- PWY-1121, suberin monomers biosynthesis: PWY-1121
- 9 reactions found over 19 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome