Difference between revisions of "2TRANSKETO-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...") |
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* direction: | * direction: | ||
** REVERSIBLE | ** REVERSIBLE | ||
− | |||
− | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1] | ** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1] | ||
+ | * common name: | ||
+ | ** transketolase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[ | + | ** 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 D-erythrose 4-phosphate[c] '''+''' 1 D-xylulose 5-phosphate[c] '''<=>''' 1 D- | + | ** 1 D-erythrose 4-phosphate[c] '''+''' 1 D-xylulose 5-phosphate[c] '''<=>''' 1 β-D-fructofuranose 6-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | |||
− | |||
− | |||
* Gene: [[SJ12026]] | * Gene: [[SJ12026]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[SJ12529]] | ||
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
− | * [[PWY | + | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY] |
− | + | ** '''5''' reactions found over '''5''' reactions in the full pathway | |
− | + | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] | |
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | * [[ | + | |
− | ** ''' | + | |
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | ||
** '''10''' reactions found over '''10''' reactions in the full pathway | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
− | * [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] | + | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] |
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] | ||
** '''7''' reactions found over '''9''' reactions in the full pathway | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
− | * [[ | + | * [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY] |
− | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
− | * [[ | + | * [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] |
− | ** ''' | + | ** '''10''' reactions found over '''12''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
Line 55: | Line 55: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830] | ** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830] | ||
Line 92: | Line 92: | ||
** [http://www.uniprot.org/uniprot/P29277 P29277] | ** [http://www.uniprot.org/uniprot/P29277 P29277] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
− | |||
{{#set: ec number=EC-2.2.1.1}} | {{#set: ec number=EC-2.2.1.1}} | ||
− | {{#set: gene associated= | + | {{#set: common name=transketolase}} |
− | {{#set: in pathway= | + | {{#set: gene associated=SJ12026|SJ12529}} |
+ | {{#set: in pathway=NONOXIPENT-PWY|P185-PWY|PWY-5723|CALVIN-PWY|PWY-1861|P21-PWY|PWY-6901}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 11:47, 10 January 2019
Contents
Reaction 2TRANSKETO-RXN
- direction:
- REVERSIBLE
- ec number:
- common name:
- transketolase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ERYTHROSE-4P[c] + 1 XYLULOSE-5-PHOSPHATE[c] <=> 1 FRUCTOSE-6P[c] + 1 GAP[c]
- With common name(s):
- 1 D-erythrose 4-phosphate[c] + 1 D-xylulose 5-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ12026
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ12529
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
- 5 reactions found over 5 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
- 7 reactions found over 9 reactions in the full pathway
- P21-PWY, pentose phosphate pathway (partial): P21-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
- 10 reactions found over 12 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: