Difference between revisions of "2TRANSKETO-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
 
 
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* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** transketolase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
 
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
 +
* common name:
 +
** transketolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
+
** 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-erythrose 4-phosphate[c] '''+''' 1 D-xylulose 5-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 &beta;-D-fructofuranose 6-phosphate[c]
+
** 1 D-erythrose 4-phosphate[c] '''+''' 1 D-xylulose 5-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ12529]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: EC-NUMBER
 
 
* Gene: [[SJ12026]]
 
* Gene: [[SJ12026]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ12529]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
 
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 
** '''10''' reactions found over '''10''' reactions in the full pathway
 
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 55: Line 55:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
 
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
Line 92: Line 92:
 
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=transketolase}}
 
 
{{#set: ec number=EC-2.2.1.1}}
 
{{#set: ec number=EC-2.2.1.1}}
−
{{#set: gene associated=SJ12529|SJ12026}}
+
{{#set: common name=transketolase}}
−
{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
{{#set: gene associated=SJ12026|SJ12529}}
 +
{{#set: in pathway=NONOXIPENT-PWY|P185-PWY|PWY-5723|CALVIN-PWY|PWY-1861|P21-PWY|PWY-6901}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 12:47, 10 January 2019

Reaction 2TRANSKETO-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • transketolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-erythrose 4-phosphate[c] + 1 D-xylulose 5-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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