Difference between revisions of "CITSYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** citrate synthase * ec num...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.3.3.16 EC-2.3.3.16] | ** [http://enzyme.expasy.org/EC/2.3.3.16 EC-2.3.3.16] | ||
** [http://enzyme.expasy.org/EC/2.3.3.1 EC-2.3.3.1] | ** [http://enzyme.expasy.org/EC/2.3.3.1 EC-2.3.3.1] | ||
| + | * common name: | ||
| + | ** citrate synthase | ||
* Synonym(s): | * Synonym(s): | ||
** Condensing enzyme | ** Condensing enzyme | ||
| Line 14: | Line 14: | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 acetyl-CoA[c] '''+''' 1 H2O[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 citrate[c] '''+''' 1 coenzyme A[c] '''+''' 1 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 24: | Line 24: | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| + | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | ||
| + | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750] | * [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750] | ||
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] | ||
| + | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
| + | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
** '''10''' reactions found over '''11''' reactions in the full pathway | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
** '''8''' reactions found over '''9''' reactions in the full pathway | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| − | * [[ | + | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] |
| − | ** ''' | + | ** '''8''' reactions found over '''10''' reactions in the full pathway |
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
** '''10''' reactions found over '''11''' reactions in the full pathway | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
| − | * [[ | + | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] |
| − | ** ''' | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | ||
** '''6''' reactions found over '''6''' reactions in the full pathway | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
** '''11''' reactions found over '''16''' reactions in the full pathway | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
| − | * [[PWY- | + | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] |
| − | + | ** '''8''' reactions found over '''9''' reactions in the full pathway | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | ** ''' | + | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
** '''10''' reactions found over '''12''' reactions in the full pathway | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 58: | Line 58: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351] | ** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351] | ||
| Line 124: | Line 124: | ||
** [http://www.uniprot.org/uniprot/P21553 P21553] | ** [http://www.uniprot.org/uniprot/P21553 P21553] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.3.3.16}} | {{#set: ec number=EC-2.3.3.16}} | ||
{{#set: ec number=EC-2.3.3.1}} | {{#set: ec number=EC-2.3.3.1}} | ||
| + | {{#set: common name=citrate synthase}} | ||
{{#set: common name=Condensing enzyme|citrate synthesis}} | {{#set: common name=Condensing enzyme|citrate synthesis}} | ||
{{#set: gene associated=SJ02212}} | {{#set: gene associated=SJ02212}} | ||
| − | {{#set: in pathway=PWY-5750|PWY-5913|PWY-6549| | + | {{#set: in pathway=TCA|PWY-5750|REDCITCYC|PWY-6728|PWY-5913|PWY-6549|PWY-7124|P105-PWY|PWY66-398|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-5690|PWY-6969|PWY-7254}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 12:01, 10 January 2019
Contents
Reaction CITSYN-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- citrate synthase
- Synonym(s):
- Condensing enzyme
- citrate synthesis
Reaction Formula
- With identifiers:
- 1 ACETYL-COA[c] + 1 WATER[c] + 1 OXALACETIC_ACID[c] => 1 CIT[c] + 1 CO-A[c] + 1 PROTON[c]
- With common name(s):
- 1 acetyl-CoA[c] + 1 H2O[c] + 1 oxaloacetate[c] => 1 citrate[c] + 1 coenzyme A[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ02212
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- TCA, TCA cycle I (prokaryotic): TCA
- 9 reactions found over 10 reactions in the full pathway
- PWY-5750, itaconate biosynthesis: PWY-5750
- 3 reactions found over 4 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 8 reactions found over 10 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi): PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- PIR:
- UNIPROT:
