Difference between revisions of "3.5.1.88-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** peptide deformylase *...") |
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Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
− | |||
− | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88] | ** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88] | ||
+ | * common name: | ||
+ | ** peptide deformylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ | + | ** 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[METHIONYL-PEPTIDE]][c] '''+''' 1 [[FORMATE]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 a [protein] N-terminal-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=> | + | ** 1 a [protein] N-terminal-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 an N-terminal L-methionyl-[protein][c] '''+''' 1 formate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Line 30: | Line 30: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24421 24421] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635] | ** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | |||
{{#set: ec number=EC-3.5.1.88}} | {{#set: ec number=EC-3.5.1.88}} | ||
+ | {{#set: common name=peptide deformylase}} | ||
{{#set: gene associated=SJ06192}} | {{#set: gene associated=SJ06192}} | ||
{{#set: in pathway=}} | {{#set: in pathway=}} |
Latest revision as of 12:13, 10 January 2019
Contents
Reaction 3.5.1.88-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- peptide deformylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 FORMYL-L-METHIONYL-PEPTIDE[c] + 1 WATER[c] => 1 METHIONYL-PEPTIDE[c] + 1 FORMATE[c]
- With common name(s):
- 1 a [protein] N-terminal-formyl-L-methionine[c] + 1 H2O[c] => 1 an N-terminal L-methionyl-[protein][c] + 1 formate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ06192
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links