Difference between revisions of "GPH-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoglycolate phosphatase *...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18] | ** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18] | ||
| + | * common name: | ||
| + | ** phosphoglycolate phosphatase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[WATER]][c] '''+''' 1 [[CPD-67]][c] '''=>''' 1 [[ | + | ** 1 [[WATER]][c] '''+''' 1 [[CPD-67]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 H2O[c] '''+''' 1 2-phosphoglycolate[c] '''=>''' 1 | + | ** 1 H2O[c] '''+''' 1 2-phosphoglycolate[c] '''=>''' 1 glycolate[c] '''+''' 1 phosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ04928]] | * Gene: [[SJ04928]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| Line 28: | Line 28: | ||
== Pathways == | == Pathways == | ||
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181] | * [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181] | ||
| − | ** ''' | + | ** '''5''' reactions found over '''9''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| − | |||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 40: | Line 40: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14370 14370] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334] | ** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334] | ||
| Line 51: | Line 51: | ||
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586] | ** [http://www.uniprot.org/uniprot/Q9S586 Q9S586] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-3.1.3.18}} | {{#set: ec number=EC-3.1.3.18}} | ||
| + | {{#set: common name=phosphoglycolate phosphatase}} | ||
{{#set: gene associated=SJ10617|SJ04928}} | {{#set: gene associated=SJ10617|SJ04928}} | ||
{{#set: in pathway=PWY-181}} | {{#set: in pathway=PWY-181}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:44, 10 January 2019
Contents
Reaction GPH-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- phosphoglycolate phosphatase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 WATER[c] + 1 CPD-67[c] => 1 GLYCOLLATE[c] + 1 Pi[c]
- With common name(s):
- 1 H2O[c] + 1 2-phosphoglycolate[c] => 1 glycolate[c] + 1 phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ10617
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-nannochloropsis_salina
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ04928
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
