Difference between revisions of "METHYLCROTONYL-COA-CARBOXYLASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...") |
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Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
− | |||
− | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4] | ** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4] | ||
+ | * common name: | ||
+ | ** 3-methylcrotonyl-CoA carboxylase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c] '''=>''' 1 [[ | + | ** 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c] '''=>''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''+''' 1 3-methylcrotonyl-CoA[c] '''=>''' 1 | + | ** 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''+''' 1 3-methylcrotonyl-CoA[c] '''=>''' 1 3-methylglutaconyl-CoA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * Gene: [[ | + | * Gene: [[SJ12008]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | ** Source: [[orthology- | + | ** Source: [[orthology-arabidopsis_thaliana]] |
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ08104]] | * Gene: [[SJ08104]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
− | * Gene: [[ | + | * Gene: [[SJ19835]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | + | * Gene: [[SJ02214]] | |
− | + | ||
− | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-nannochloropsis_salina]] | ||
== Pathways == | == Pathways == | ||
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY] | * [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY] | ||
− | ** ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
Line 47: | Line 47: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13590 13590] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138] | ** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138] | ||
Line 54: | Line 54: | ||
** [http://www.uniprot.org/uniprot/Q42777 Q42777] | ** [http://www.uniprot.org/uniprot/Q42777 Q42777] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | |||
{{#set: ec number=EC-6.4.1.4}} | {{#set: ec number=EC-6.4.1.4}} | ||
− | {{#set: gene associated= | + | {{#set: common name=3-methylcrotonyl-CoA carboxylase}} |
+ | {{#set: gene associated=SJ12008|SJ08104|SJ19835|SJ02214}} | ||
{{#set: in pathway=LEU-DEG2-PWY}} | {{#set: in pathway=LEU-DEG2-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 13:56, 10 January 2019
Contents
Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- 3-methylcrotonyl-CoA carboxylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 HCO3[c] + 1 ATP[c] + 1 3-METHYL-CROTONYL-COA[c] => 1 TRANS-3-METHYL-GLUTACONYL-COA[c] + 1 ADP[c] + 1 Pi[c] + 1 PROTON[c]
- With common name(s):
- 1 hydrogencarbonate[c] + 1 ATP[c] + 1 3-methylcrotonyl-CoA[c] => 1 3-methylglutaconyl-CoA[c] + 1 ADP[c] + 1 phosphate[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ12008
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08104
- Source: orthology-nannochloropsis_salina
- Gene: SJ19835
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ02214
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: annotation-saccharina_japonica_genome
Pathways
- LEU-DEG2-PWY, L-leucine degradation I: LEU-DEG2-PWY
- 4 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links