Difference between revisions of "SUCCCOASYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** succinyl-CoA synthet...")
 
 
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* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** succinyl-CoA synthetase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
 
** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
 +
* common name:
 +
** succinyl-CoA synthetase
 
* Synonym(s):
 
* Synonym(s):
 
** Succinate thiokinase
 
** Succinate thiokinase
Line 13: Line 13:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[SUC-COA]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[SUC-COA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 succinate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 succinyl-CoA[c] '''+''' 1 phosphate[c]
+
** 1 ATP[c] '''+''' 1 succinate[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 succinyl-CoA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Line 22: Line 22:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ03269]]
 
* Gene: [[SJ03269]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
 
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
** '''6''' reactions found over '''12''' reactions in the full pathway
 
** '''6''' reactions found over '''12''' reactions in the full pathway
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
+
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
 
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''9''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-nannochloropsis_salina]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-nannochloropsis_salina]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 69: Line 69:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
Line 93: Line 93:
 
** [http://www.uniprot.org/uniprot/O82662 O82662]
 
** [http://www.uniprot.org/uniprot/O82662 O82662]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=succinyl-CoA synthetase}}
 
 
{{#set: ec number=EC-6.2.1.5}}
 
{{#set: ec number=EC-6.2.1.5}}
 +
{{#set: common name=succinyl-CoA synthetase}}
 
{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
 
{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
 
{{#set: gene associated=SJ21782|SJ03269}}
 
{{#set: gene associated=SJ21782|SJ03269}}
−
{{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-6969|PWY-5537|PWY-6728|PWY-5538|PWY-5690|PWY66-398|TCA}}
+
{{#set: in pathway=PWY-5537|TCA|PWY-7384|PWY-6728|PWY-5913|PWY-5392|PWY66-398|PWY-5538|P42-PWY|PWY-5690|PWY-6969|P23-PWY}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 12:57, 10 January 2019

Reaction SUCCCOASYN-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • succinyl-CoA synthetase
  • Synonym(s):
    • Succinate thiokinase
    • succinyl CoA synthesis

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 succinate[c] + 1 coenzyme A[c] <=> 1 succinyl-CoA[c] + 1 ADP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5537, pyruvate fermentation to acetate V: PWY-5537
    • 2 reactions found over 4 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 2 reactions found over 4 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 9 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=SUCCCOASYN-RXN&oldid=18086"