Difference between revisions of "RXN-7984"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7984 RXN-7984] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin de-epoxidase * S...") |
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[CPD1F-133]][c] '''+''' 1 [[ASCORBATE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD1F-131]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 H+[c] '''+''' 1 violaxanthin[c] '''+''' 1 L-ascorbate[c] '''=>''' 1 H2O[c] '''+''' 1 antheraxanthin[c] '''+''' 1 L-dehydro-ascorbate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ03764]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | + | * Gene: [[SJ19927]] | |
| − | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-nannochloropsis_salina]] | ||
* Gene: [[SJ20456]] | * Gene: [[SJ20456]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| − | * [[PWY-5945]], | + | * [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945] |
** '''2''' reactions found over '''4''' reactions in the full pathway | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| Line 38: | Line 38: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15354 15354] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R07178 R07178] | ** [http://www.genome.jp/dbget-bin/www_bget?R07178 R07178] | ||
| Line 44: | Line 44: | ||
{{#set: common name=violaxanthin de-epoxidase}} | {{#set: common name=violaxanthin de-epoxidase}} | ||
{{#set: common name=VDE}} | {{#set: common name=VDE}} | ||
| − | {{#set: gene associated= | + | {{#set: gene associated=SJ03764|SJ19927|SJ20456}} |
{{#set: in pathway=PWY-5945}} | {{#set: in pathway=PWY-5945}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:08, 10 January 2019
Contents
Reaction RXN-7984
- direction:
- LEFT-TO-RIGHT
- common name:
- violaxanthin de-epoxidase
- Synonym(s):
- VDE
Reaction Formula
- With identifiers:
- With common name(s):
- 1 H+[c] + 1 violaxanthin[c] + 1 L-ascorbate[c] => 1 H2O[c] + 1 antheraxanthin[c] + 1 L-dehydro-ascorbate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ03764
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19927
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: annotation-saccharina_japonica_genome
- Gene: SJ20456
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-5945, violaxanthin, antheraxanthin and zeaxanthin interconversion: PWY-5945
- 2 reactions found over 4 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
