Difference between revisions of "PEPDEPHOS-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** pyruvate kinase * ec n...") |
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == | ||
* direction: | * direction: | ||
− | ** | + | ** LEFT-TO-RIGHT |
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40] | ||
* common name: | * common name: | ||
** pyruvate kinase | ** pyruvate kinase | ||
− | |||
− | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 phosphoenolpyruvate[c] '''=>''' 1 ATP[c] '''+''' 1 pyruvate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | |||
− | |||
− | |||
* Gene: [[SJ18193]] | * Gene: [[SJ18193]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
− | * Gene: [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
+ | * Gene: [[SJ17585]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
− | + | * Gene: [[SJ18192]] | |
− | + | ||
− | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[SJ13451]] | ||
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-arabidopsis_thaliana]] | ||
+ | ** Source: [[orthology-arabidopsis_thaliana]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886] |
− | ** ''' | + | ** '''8''' reactions found over '''11''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] |
− | + | ** '''10''' reactions found over '''11''' reactions in the full pathway | |
− | + | ||
− | ** ''' | + | |
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] | ||
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | ||
** '''12''' reactions found over '''15''' reactions in the full pathway | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] |
− | ** '''8''' reactions found over ''' | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
+ | * [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] | ||
+ | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY] | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY] | ||
** '''10''' reactions found over '''10''' reactions in the full pathway | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
** '''11''' reactions found over '''16''' reactions in the full pathway | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] | ||
− | ** '''10''' reactions found over ''' | + | ** '''10''' reactions found over '''15''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042] |
− | ** ''' | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] |
− | ** ''' | + | ** '''7''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] |
− | ** ''' | + | ** '''6''' reactions found over '''9''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] |
− | ** ''' | + | ** '''10''' reactions found over '''12''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
− | |||
− | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
Line 132: | Line 132: | ||
** [http://www.uniprot.org/uniprot/Q43117 Q43117] | ** [http://www.uniprot.org/uniprot/Q43117 Q43117] | ||
** [http://www.uniprot.org/uniprot/Q10208 Q10208] | ** [http://www.uniprot.org/uniprot/Q10208 Q10208] | ||
− | {{#set: direction= | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | + | ||
{{#set: ec number=EC-2.7.1.40}} | {{#set: ec number=EC-2.7.1.40}} | ||
− | {{#set: gene associated= | + | {{#set: common name=pyruvate kinase}} |
− | {{#set: in pathway=PWY- | + | {{#set: gene associated=SJ18193|SJ17585|SJ18192|SJ13451}} |
+ | {{#set: in pathway=PWY-6886|PWY-5484|GLYCOLYSIS|P124-PWY|PWY-5723|NPGLUCAT-PWY|PWY-7003|ANAGLYCOLYSIS-PWY|P122-PWY|FERMENTATION-PWY|PWY-7383|P341-PWY|PWY-6142|PWY-1042|PWY-7218|PWY-2221|PWY-6901}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction source=orthology-arabidopsis_thaliana| | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 14:18, 10 January 2019
Contents
Reaction PEPDEPHOS-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- pyruvate kinase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ADP[c] + 1 PROTON[c] + 1 PHOSPHO-ENOL-PYRUVATE[c] => 1 ATP[c] + 1 PYRUVATE[c]
- With common name(s):
- 1 ADP[c] + 1 H+[c] + 1 phosphoenolpyruvate[c] => 1 ATP[c] + 1 pyruvate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ18193
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-nannochloropsis_salina
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ17585
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ18192
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13451
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
- 8 reactions found over 11 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-7003, glycerol degradation to butanol: PWY-7003
- 8 reactions found over 10 reactions in the full pathway
- ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
- 10 reactions found over 10 reactions in the full pathway
- P122-PWY, heterolactic fermentation: P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
- 4 reactions found over 7 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus): P341-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
- 10 reactions found over 15 reactions in the full pathway
- PWY-1042, glycolysis IV (plant cytosol): PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
- 7 reactions found over 10 reactions in the full pathway
- PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
- 6 reactions found over 9 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
- 10 reactions found over 12 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- Q7M034
- P11979
- P11980
- Q07637
- P34038
- P43924
- Q57572
- P0AD61
- P19680
- Q9PIB0
- P80885
- Q9UYU6
- Q9JWX8
- P47458
- Q46078
- P30614
- P22200
- Q27788
- P51182
- P51181
- P31865
- P00549
- P00548
- P30613
- O75758
- P12928
- O30853
- P30615
- P30616
- Q02499
- P22360
- P21599
- P14618
- Q42954
- Q40545
- P52480
- P52489
- P78031
- Q55863
- P73534
- O65595
- Q42806
- Q43117
- Q10208