Difference between revisions of "RXN-12978"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12978 RXN-12978] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA synthetase ** long...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3] | ||
* common name: | * common name: | ||
** acyl-CoA synthetase | ** acyl-CoA synthetase | ||
** long-chain fatty acid-CoA ligase | ** long-chain fatty acid-CoA ligase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-14018]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 icosapentaenoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 icosapentaenoyl-CoA[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ13972]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | + | ** Source: [[orthology-ectocarpus_siliculosus]] | |
| − | ** Source: [[ | + | * Gene: [[SJ08692]] |
| − | + | ||
| − | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | + | * Gene: [[SJ03650]] | |
| − | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ08691]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ05591]] |
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
| + | * Gene: [[SJ08690]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 49: | Line 49: | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: ec number=EC-6.2.1.3}} | ||
{{#set: common name=acyl-CoA synthetase}} | {{#set: common name=acyl-CoA synthetase}} | ||
{{#set: common name=long-chain fatty acid-CoA ligase}} | {{#set: common name=long-chain fatty acid-CoA ligase}} | ||
| − | + | {{#set: gene associated=SJ13972|SJ08692|SJ03650|SJ08691|SJ05591|SJ08690}} | |
| − | {{#set: gene associated= | + | |
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:18, 10 January 2019
Contents
Reaction RXN-12978
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- acyl-CoA synthetase
- long-chain fatty acid-CoA ligase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 icosapentaenoate[c] + 1 ATP[c] + 1 coenzyme A[c] => 1 AMP[c] + 1 icosapentaenoyl-CoA[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ13972
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08692
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ03650
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08691
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ05591
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08690
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
