Difference between revisions of "RNA-LIGASE-ATP-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-LIGASE-ATP-RXN RNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** RNA ligas...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/6.5.1.3 EC-6.5.1.3] | ** [http://enzyme.expasy.org/EC/6.5.1.3 EC-6.5.1.3] | ||
| + | * common name: | ||
| + | ** RNA ligase (ATP) | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[3Prime-OH-Terminated-RNAs]][c] '''+''' 1 [[5-Phospho-RNA]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[RNA-Holder]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 an [RNA]-3'-hydroxyl[c] '''+''' 1 a 5'-phospho-ribonucleoside-[RNA][c] '''+''' 1 ATP[c] '''=>''' 1 a ribonucleic acid[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
* Gene: [[SJ03634]] | * Gene: [[SJ03634]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[SJ14703]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
== Reconstruction information == | == Reconstruction information == | ||
| Line 36: | Line 36: | ||
** [http://www.uniprot.org/uniprot/P00971 P00971] | ** [http://www.uniprot.org/uniprot/P00971 P00971] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-6.5.1.3}} | {{#set: ec number=EC-6.5.1.3}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=RNA ligase (ATP)}} |
| + | {{#set: gene associated=SJ03634|SJ14703}} | ||
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:23, 10 January 2019
Contents
Reaction RNA-LIGASE-ATP-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- RNA ligase (ATP)
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 3Prime-OH-Terminated-RNAs[c] + 1 5-Phospho-RNA[c] + 1 ATP[c] => 1 RNA-Holder[c] + 1 AMP[c] + 1 PPI[c]
- With common name(s):
- 1 an [RNA]-3'-hydroxyl[c] + 1 a 5'-phospho-ribonucleoside-[RNA][c] + 1 ATP[c] => 1 a ribonucleic acid[c] + 1 AMP[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ03634
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14703
- Source: orthology-ectocarpus_siliculosus
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
