Difference between revisions of "GLYOHMETRANS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** REVERSIBLE * common name: ** 5,10-methylenete...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.1.2.1 EC-2.1.2.1]
 
** [http://enzyme.expasy.org/EC/2.1.2.1 EC-2.1.2.1]
 +
* common name:
 +
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THF-GLU-N]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
+
** 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tetrahydrofolate[c] '''+''' 1 L-serine[c] '''<=>''' 1 H2O[c] '''+''' 1 glycine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c]
+
** 1 L-serine[c] '''+''' 1 a tetrahydrofolate[c] '''<=>''' 1 glycine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ03668]]
+
* Gene: [[SJ15530]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ03668]]
−
* Gene: [[SJ15530]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
 
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
+
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
* [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY]
 
* [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
+
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
−
** '''12''' reactions found over '''24''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
 
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
−
** '''7''' reactions found over '''13''' reactions in the full pathway
+
** '''6''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 54: Line 54:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
Line 99: Line 99:
 
** [http://www.uniprot.org/uniprot/P07511 P07511]
 
** [http://www.uniprot.org/uniprot/P07511 P07511]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
 
 
{{#set: ec number=EC-2.1.2.1}}
 
{{#set: ec number=EC-2.1.2.1}}
−
{{#set: gene associated=SJ03668|SJ15530}}
+
{{#set: common name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
−
{{#set: in pathway=PWY-2161|PWY-181|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-1622|PWY-3661-1}}
+
{{#set: gene associated=SJ15530|SJ03668}}
 +
{{#set: in pathway=PWY-5497|PWY-2161|PWY-3841|PWY-2201|1CMET2-PWY|PWY-181|PWY-3661-1|GLYSYN-PWY|PWY-3661|PWY-1622}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:48, 10 January 2019

Reaction GLYOHMETRANS-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-serine[c] + 1 a tetrahydrofolate[c] <=> 1 glycine[c] + 1 a 5,10-methylene-tetrahydrofolate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-2161, folate polyglutamylation: PWY-2161
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2201, folate transformations I: PWY-2201
    • 9 reactions found over 12 reactions in the full pathway
  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-3661-1, glycine betaine degradation II (mammalian): PWY-3661-1
    • 2 reactions found over 4 reactions in the full pathway
  • GLYSYN-PWY, glycine biosynthesis I: GLYSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I: PWY-3661
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
    • 6 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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