Difference between revisions of "RXN-14971"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] == * direction: ** LEFT-TO-RIGHT * common name: ** succinate dehydrogenase * e...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** succinate dehydrogenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
 
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
 +
* common name:
 +
** succinate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ETR-Quinones]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[ETR-Quinols]][c]
+
** 1 [[ETR-Quinones]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[FUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an electron-transfer quinone[c] '''+''' 1 succinate[c] '''=>''' 1 fumarate[c] '''+''' 1 an electron-transfer quinol[c]
+
** 1 an electron-transfer quinone[c] '''+''' 1 succinate[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 fumarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[SJ01012]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ02118]]
 
* Gene: [[SJ02118]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ17484]]
+
* Gene: [[SJ18770]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ19480]]
 
* Gene: [[SJ19480]]
Line 27: Line 31:
 
* Gene: [[SJ02694]]
 
* Gene: [[SJ02694]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ01012]]
+
* Gene: [[SJ17484]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ18770]]
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
+
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
** '''10''' reactions found over '''12''' reactions in the full pathway
 
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
 
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 56: Line 56:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=40524 40524]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=succinate dehydrogenase}}
 
 
{{#set: ec number=EC-1.3.5.1}}
 
{{#set: ec number=EC-1.3.5.1}}
−
{{#set: gene associated=SJ02118|SJ17484|SJ19480|SJ02694|SJ01012|SJ18770}}
+
{{#set: common name=succinate dehydrogenase}}
−
{{#set: in pathway=PWY-561|P105-PWY|PWY-6969|PWY-6728|PWY-7254|PWY-5690|TCA}}
+
{{#set: gene associated=SJ01012|SJ02118|SJ18770|SJ19480|SJ02694|SJ17484}}
 +
{{#set: in pathway=TCA|PWY-6728|P105-PWY|PWY-561|PWY-5690|PWY-6969|PWY-7254}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 13:49, 10 January 2019

Reaction RXN-14971

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • succinate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an electron-transfer quinone[c] + 1 succinate[c] => 1 an electron-transfer quinol[c] + 1 fumarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation: PWY-561
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN-14971&oldid=19752"