Difference between revisions of "DUTP-PYROP-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleotide diphos...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
− | |||
− | |||
− | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23] | ** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23] | ||
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9] | ** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9] | ||
+ | * common name: | ||
+ | ** nucleotide diphosphatase | ||
+ | ** deoxyuridine triphosphatase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 dUTP[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 dUMP[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * Gene: [[ | + | * Gene: [[SJ19893]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | ** Source: [[orthology-arabidopsis_thaliana]] |
+ | * Gene: [[SJ12166]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | + | * Gene: [[SJ04934]] | |
− | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | * Gene: [[SJ22529]] |
− | + | ||
− | + | ||
− | + | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | * Gene: [[SJ08998]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
Line 41: | Line 38: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | * Gene: [[SJ12893]] |
+ | ** Source: [[annotation-saccharina_japonica_genome]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[SJ08856]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | * Gene: [[ | + | * Gene: [[SJ19894]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
− | ** Source: [[orthology- | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
== Pathways == | == Pathways == | ||
− | |||
− | |||
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] | ||
** '''9''' reactions found over '''9''' reactions in the full pathway | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
− | |||
− | |||
− | |||
− | |||
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] | ||
** '''14''' reactions found over '''17''' reactions in the full pathway | ** '''14''' reactions found over '''17''' reactions in the full pathway | ||
+ | * [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
Line 70: | Line 70: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100] | ** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100] | ||
Line 103: | Line 103: | ||
** [http://www.uniprot.org/uniprot/P28893 P28893] | ** [http://www.uniprot.org/uniprot/P28893 P28893] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | |||
− | |||
{{#set: ec number=EC-3.6.1.23}} | {{#set: ec number=EC-3.6.1.23}} | ||
{{#set: ec number=EC-3.6.1.9}} | {{#set: ec number=EC-3.6.1.9}} | ||
− | {{#set: gene associated= | + | {{#set: common name=nucleotide diphosphatase}} |
− | {{#set: in pathway=PWY- | + | {{#set: common name=deoxyuridine triphosphatase}} |
+ | {{#set: gene associated=SJ19893|SJ12166|SJ04934|SJ22529|SJ08998|SJ07337|SJ12893|SJ08856|SJ19894}} | ||
+ | {{#set: in pathway=PWY-7184|PWY0-166|PWY-7206|PWY-6545|PWY-7187}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction source=orthology-arabidopsis_thaliana | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 14:53, 10 January 2019
Contents
Reaction DUTP-PYROP-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- nucleotide diphosphatase
- deoxyuridine triphosphatase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 dUTP[c] + 1 H2O[c] => 1 H+[c] + 1 dUMP[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ19893
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-arabidopsis_thaliana
- Source: annotation-saccharina_japonica_genome
- Gene: SJ12166
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ04934
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ22529
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08998
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ07337
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ12893
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
- Gene: SJ08856
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19894
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
- 9 reactions found over 9 reactions in the full pathway
- PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
- 14 reactions found over 17 reactions in the full pathway
- PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation: PWY-7206
- 2 reactions found over 3 reactions in the full pathway
- PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
- 8 reactions found over 9 reactions in the full pathway
- PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
- 6 reactions found over 7 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: