Difference between revisions of "RXN-12263"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** LEFT-TO-RIGHT * common name: ** presqualene diphosphate syn...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103] | ** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103] | ||
| + | * common name: | ||
| + | ** farnesyl-diphosphate farnesyltransferase | ||
| + | ** presqualene diphosphate synthase | ||
* Synonym(s): | * Synonym(s): | ||
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** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
* Gene: [[SJ02885]] | * Gene: [[SJ02885]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
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* Category: [[orthology]] | * Category: [[orthology]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
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| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-nannochloropsis_salina]] | ** Source: [[orthology-nannochloropsis_salina]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
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** [http://www.uniprot.org/uniprot/Q02769 Q02769] | ** [http://www.uniprot.org/uniprot/Q02769 Q02769] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
| − | |||
{{#set: ec number=EC-2.5.1.103}} | {{#set: ec number=EC-2.5.1.103}} | ||
| + | {{#set: common name=farnesyl-diphosphate farnesyltransferase}} | ||
| + | {{#set: common name=presqualene diphosphate synthase}} | ||
{{#set: gene associated=SJ13532|SJ02885}} | {{#set: gene associated=SJ13532|SJ02885}} | ||
{{#set: in pathway=PWY-7072|PWY-6105|PWY-6767|PWY-5875}} | {{#set: in pathway=PWY-7072|PWY-6105|PWY-6767|PWY-5875}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=orthology-arabidopsis_thaliana| | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:53, 10 January 2019
Contents
Reaction RXN-12263
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- farnesyl-diphosphate farnesyltransferase
- presqualene diphosphate synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 FARNESYL-PP[c] => 1 CPD-465[c] + 1 PPI[c]
- With common name(s):
- 2 (2E,6E)-farnesyl diphosphate[c] => 1 presqualene diphosphate[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ13532
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-nannochloropsis_salina
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ02885
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
- 1 reactions found over 14 reactions in the full pathway
- PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
- 2 reactions found over 9 reactions in the full pathway
- PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
- 1 reactions found over 9 reactions in the full pathway
- PWY-5875, staphyloxanthin biosynthesis: PWY-5875
- 1 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-nannochloropsis_salina
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
- LIGAND-RXN:
- UNIPROT:
