Difference between revisions of "OXALODECARB-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oxaloacetate de...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
| − | |||
* ec number: | * ec number: | ||
| − | ** [http://enzyme.expasy.org/EC/1.1.1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.40 EC-1.1.1.40] |
** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3] | ** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3] | ||
| + | ** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38] | ||
| + | * common name: | ||
| + | ** malate dehydrogenase (decarboxylating) (NAD+) | ||
| + | ** oxaloacetate decarboxylase | ||
* Synonym(s): | * Synonym(s): | ||
| Line 33: | Line 34: | ||
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY] | * [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY] | ||
** '''2''' reactions found over '''6''' reactions in the full pathway | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
| − | |||
| − | |||
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY] | * [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY] | ||
** '''2''' reactions found over '''8''' reactions in the full pathway | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339] | ||
| + | ** '''2''' reactions found over '''11''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 46: | Line 47: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217] | ** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217] | ||
| Line 55: | Line 56: | ||
** [http://www.uniprot.org/uniprot/Q58628 Q58628] | ** [http://www.uniprot.org/uniprot/Q58628 Q58628] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | + | {{#set: ec number=EC-1.1.1.40}} | |
| − | + | ||
| − | {{#set: ec number=EC-1.1.1. | + | |
{{#set: ec number=EC-4.1.1.3}} | {{#set: ec number=EC-4.1.1.3}} | ||
| + | {{#set: ec number=EC-1.1.1.38}} | ||
| + | {{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}} | ||
| + | {{#set: common name=oxaloacetate decarboxylase}} | ||
{{#set: gene associated=SJ11643|SJ14191|SJ13180}} | {{#set: gene associated=SJ11643|SJ14191|SJ13180}} | ||
| − | {{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY | + | {{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|P184-PWY|PWY-6339}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:03, 10 January 2019
Contents
Reaction OXALODECARB-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- malate dehydrogenase (decarboxylating) (NAD+)
- oxaloacetate decarboxylase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 OXALACETIC_ACID[c] + 1 PROTON[c] => 1 PYRUVATE[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 oxaloacetate[c] + 1 H+[c] => 1 pyruvate[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ11643
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ14191
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ13180
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation: METHYLGALLATE-DEGRADATION-PWY
- 2 reactions found over 6 reactions in the full pathway
- P184-PWY, protocatechuate degradation I (meta-cleavage pathway): P184-PWY
- 2 reactions found over 8 reactions in the full pathway
- PWY-6339, syringate degradation: PWY-6339
- 2 reactions found over 11 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
