Difference between revisions of "CARBPSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl phosphate s...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** carbamoyl phosphate synthetase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
 
** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
 +
* common name:
 +
** carbamoyl phosphate synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HCO3]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 2 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[GLT]][c]
+
** 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hydrogencarbonate[c] '''+''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 2 ATP[c] '''=>''' 1 phosphate[c] '''+''' 2 H+[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 2 ADP[c] '''+''' 1 L-glutamate[c]
+
** 2 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 H2O[c] '''=>''' 1 L-glutamate[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 2 ADP[c] '''+''' 1 phosphate[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
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** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
* Gene: [[SJ15949]]
 
* Gene: [[SJ15949]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
 
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
+
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-nannochloropsis_salina]]
 
** Source: [[orthology-nannochloropsis_salina]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
 
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
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** [http://www.uniprot.org/uniprot/O50302 O50302]
 
** [http://www.uniprot.org/uniprot/O50302 O50302]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carbamoyl phosphate synthetase}}
 
 
{{#set: ec number=EC-6.3.5.5}}
 
{{#set: ec number=EC-6.3.5.5}}
 +
{{#set: common name=carbamoyl phosphate synthetase}}
 
{{#set: gene associated=SJ17851|SJ15949}}
 
{{#set: gene associated=SJ17851|SJ15949}}
−
{{#set: in pathway=ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7400|PWY-7791|PWY-5686}}
+
{{#set: in pathway=PWY-7400|PWY-5686|ARGSYN-PWY|PWY-7791|PWY-7790|ARGSYNBSUB-PWY|PWY-5154}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-nannochloropsis_salina|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-nannochloropsis_salina|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:05, 10 January 2019

Reaction CARBPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • carbamoyl phosphate synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 ATP[c] + 1 L-glutamine[c] + 1 hydrogencarbonate[c] + 1 H2O[c] => 1 L-glutamate[c] + 1 carbamoyl phosphate[c] + 2 ADP[c] + 1 phosphate[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 5 reactions found over 6 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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