Difference between revisions of "UDP-GLUCURONATE-DECARBOXYLASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-GLUCURONATE-DECARBOXYLASE-RXN UDP-GLUCURONATE-DECARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIG...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/4.1.1.35 EC-4.1.1.35] | ** [http://enzyme.expasy.org/EC/4.1.1.35 EC-4.1.1.35] | ||
| + | * common name: | ||
| + | ** UDP-xylose synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[PROTON]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[UDP-D-XYLOSE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 H+[c] '''+''' 1 UDP-α-D-glucuronate[c] '''=>''' 1 UDP-α-D-xylose[c] '''+''' 1 CO2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ00231]] | * Gene: [[SJ00231]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ10476]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| − | * [[PWY-4821]], UDP-D-xylose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4821 PWY-4821] | + | * [[PWY-4821]], UDP-α-D-xylose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4821 PWY-4821] |
** '''2''' reactions found over '''3''' reactions in the full pathway | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| Line 36: | Line 36: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23917 23917] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R01384 R01384] | ** [http://www.genome.jp/dbget-bin/www_bget?R01384 R01384] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-4.1.1.35}} | {{#set: ec number=EC-4.1.1.35}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=UDP-xylose synthase}} |
| + | {{#set: gene associated=SJ00231|SJ10476}} | ||
{{#set: in pathway=PWY-4821}} | {{#set: in pathway=PWY-4821}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | {{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 15:07, 10 January 2019
Contents
Reaction UDP-GLUCURONATE-DECARBOXYLASE-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- UDP-xylose synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PROTON[c] + 1 UDP-GLUCURONATE[c] => 1 UDP-D-XYLOSE[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 H+[c] + 1 UDP-α-D-glucuronate[c] => 1 UDP-α-D-xylose[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ00231
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ10476
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-4821, UDP-α-D-xylose biosynthesis: PWY-4821
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
