Difference between revisions of "RXN-11486"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11486 RXN-11486] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-octaprenyltranstransf...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/2.5.1.85 EC-2.5.1.85] | ** [http://enzyme.expasy.org/EC/2.5.1.85 EC-2.5.1.85] | ||
| + | * common name: | ||
| + | ** trans-octaprenyltranstransferase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[GERANYLGERANYL-PP]][c] '''+''' 5 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' | + | ** 1 [[GERANYLGERANYL-PP]][c] '''+''' 5 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[SOLANESYL-PYROPHOSPHATE]][c] '''+''' 5 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 geranylgeranyl diphosphate[c] '''+''' 5 isopentenyl diphosphate[c] '''=>''' | + | ** 1 geranylgeranyl diphosphate[c] '''+''' 5 isopentenyl diphosphate[c] '''=>''' 1 all-trans-nonaprenyl diphosphate[c] '''+''' 5 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ10418]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| − | + | * Gene: [[SJ19255]] | |
| − | * Gene: [[ | + | |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: GO-TERM | *** Assignment: GO-TERM | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
* [[PWY-6520]], nonaprenyl diphosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6520 PWY-6520] | * [[PWY-6520]], nonaprenyl diphosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6520 PWY-6520] | ||
| Line 36: | Line 36: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27595 27595] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R09251 R09251] | ** [http://www.genome.jp/dbget-bin/www_bget?R09251 R09251] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-2.5.1.85}} | {{#set: ec number=EC-2.5.1.85}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=trans-octaprenyltranstransferase}} |
| + | {{#set: gene associated=SJ10418|SJ19255}} | ||
{{#set: in pathway=PWY-6520}} | {{#set: in pathway=PWY-6520}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:10, 10 January 2019
Contents
Reaction RXN-11486
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- trans-octaprenyltranstransferase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GERANYLGERANYL-PP[c] + 5 DELTA3-ISOPENTENYL-PP[c] => 1 SOLANESYL-PYROPHOSPHATE[c] + 5 PPI[c]
- With common name(s):
- 1 geranylgeranyl diphosphate[c] + 5 isopentenyl diphosphate[c] => 1 all-trans-nonaprenyl diphosphate[c] + 5 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ10418
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
- Gene: SJ19255
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-6520, nonaprenyl diphosphate biosynthesis II: PWY-6520
- 1 reactions found over 1 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
