Difference between revisions of "GDPKIN-RXN"

Revision as of 09:27, 18 May 2018

Reaction GDPKIN-RXN

• direction:
  • LEFT-TO-RIGHT
• common name:
  • nucleoside diphosphate kinase
  • GDP kinase
• ec number:
  • EC-2.7.4.6
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 GDP[c] + 1 ATP[c] => 1 GTP[c] + 1 ADP[c]
• With common name(s):
  • 1 GDP[c] + 1 ATP[c] => 1 GTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: SJ07124
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ21816
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ21967
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ08159
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ21705
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ20076
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ16893
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ20794
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ10125
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-arabidopsis_thaliana

Pathways

• PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
  • 4 reactions found over 4 reactions in the full pathway
• PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
  • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
• Category: annotation
  • Source: annotation-saccharina_japonica_genome
    • Tool: pathwaytools

External links

• RHEA:
  • 27686
• LIGAND-RXN:
  • R00330