Difference between revisions of "VALINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** valine-tRNA ligase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
 
** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
 +
* common name:
 +
** valine-tRNA ligase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[VAL-tRNAs]][c] '''+''' 1 [[VAL]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c]
+
** 1 [[VAL-tRNAs]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a tRNAval[c] '''+''' 1 L-valine[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-valyl-[tRNAval][c]
+
** 1 a tRNAVal[c] '''+''' 1 L-valine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-valyl-[tRNAVal][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ04395]]
+
* Gene: [[SJ20484]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ05104]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ05104]]
+
* Gene: [[SJ04395]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ20484]]
+
* Gene: [[SJ02063]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ15367]]
+
* Gene: [[SJ02072]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ02072]]
+
* Gene: [[SJ16362]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 37: Line 40:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ16362]]
+
* Gene: [[SJ15367]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[SJ02063]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 55: Line 55:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10705 10705]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
 
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
Line 87: Line 87:
 
** [http://www.uniprot.org/uniprot/O77443 O77443]
 
** [http://www.uniprot.org/uniprot/O77443 O77443]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=valine-tRNA ligase}}
 
 
{{#set: ec number=EC-6.1.1.9}}
 
{{#set: ec number=EC-6.1.1.9}}
−
{{#set: gene associated=SJ04395|SJ05104|SJ20484|SJ15367|SJ02072|SJ05105|SJ16362|SJ02063}}
+
{{#set: common name=valine-tRNA ligase}}
 +
{{#set: gene associated=SJ20484|SJ05104|SJ04395|SJ02063|SJ02072|SJ16362|SJ05105|SJ15367}}
 
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:42, 10 January 2019

Reaction VALINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • valine-tRNA ligase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAVal[c] + 1 L-valine[c] + 1 ATP[c] => 1 an L-valyl-[tRNAVal][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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