Difference between revisions of "RXN0-882"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-882 RXN0-882] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-hydroxy-3-methylbut-2-en-1-...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.17.7.1 EC-1.17.7.1] | ** [http://enzyme.expasy.org/EC/1.17.7.1 EC-1.17.7.1] | ||
| + | * common name: | ||
| + | ** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' | + | ** 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate | + | ** 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H+[c] '''=>''' 1 H2O[c] '''+''' 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 32: | Line 32: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26121 26121] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R08689 R08689] | ** [http://www.genome.jp/dbget-bin/www_bget?R08689 R08689] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-1.17.7.1}} | {{#set: ec number=EC-1.17.7.1}} | ||
| + | {{#set: common name=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase}} | ||
{{#set: gene associated=SJ05642}} | {{#set: gene associated=SJ05642}} | ||
{{#set: in pathway=PWY-7560}} | {{#set: in pathway=PWY-7560}} | ||
Latest revision as of 15:44, 10 January 2019
Contents
Reaction RXN0-882
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE[c] + 2 Reduced-ferredoxins[c] + 1 PROTON[c] => 1 WATER[c] + 1 HYDROXY-METHYL-BUTENYL-DIP[c] + 2 Oxidized-ferredoxins[c]
- With common name(s):
- 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 1 H+[c] => 1 H2O[c] + 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] + 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ05642
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
