Difference between revisions of "NADH-DEHYDROG-A-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NADH-DEHYDROG-A-RXN NADH-DEHYDROG-A-RXN] == * direction: ** REVERSIBLE * common name: ** NADH:ubiqu...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.6.5.3 EC-1.6.5.3]
 
* common name:
 
* common name:
 
** NADH:ubiquinone oxidoreductase (H+-transporting)
 
** NADH:ubiquinone oxidoreductase (H+-transporting)
 
** NADH dehydrogenase (ubiquinone)
 
** NADH dehydrogenase (ubiquinone)
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.6.5.3 EC-1.6.5.3]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 5 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[Ubiquinones]][c] '''<=>''' 4 [[PROTON]][e] '''+''' 1 [[Ubiquinols]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[Ubiquinones]][c] '''+''' 1 [[NADH]][c] '''+''' 5 [[PROTON]][c] '''<=>''' 4 [[PROTON]][e] '''+''' 1 [[NAD]][c] '''+''' 1 [[Ubiquinols]][c]
 
* With common name(s):
 
* With common name(s):
−
** 5 H+[c] '''+''' 1 NADH[c] '''+''' 1 a ubiquinone[c] '''<=>''' 4 H+[e] '''+''' 1 an ubiquinol[c] '''+''' 1 NAD+[c]
+
** 1 a ubiquinone[c] '''+''' 1 NADH[c] '''+''' 5 H+[c] '''<=>''' 4 H+[e] '''+''' 1 NAD+[c] '''+''' 1 an ubiquinol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ16410]]
+
* Gene: [[SJ22333]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ02471]]
+
* Gene: [[SJ15310]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ03600]]
+
* Gene: [[SJ14995]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ22333]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ19412]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ15310]]
+
* Gene: [[SJ16410]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ09960]]
+
* Gene: [[SJ05715]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
−
* Gene: [[SJ21895]]
+
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ19412]]
+
* Gene: [[SJ21333]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ19948]]
+
* Gene: [[SJ10422]]
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ21333]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 55: Line 53:
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ05715]]
+
* Gene: [[SJ09960]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
−
* Gene: [[SJ14995]]
+
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
 
* Gene: [[SJ15450]]
 
* Gene: [[SJ15450]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ10422]]
+
* Gene: [[SJ21895]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ03600]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ19948]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ02471]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
 
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY0-1334]], NADH to cytochrome bd oxidase electron transfer I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1334 PWY0-1334]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
* [[PWY0-1335]], NADH to cytochrome bo oxidase electron transfer I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1335 PWY0-1335]
 
* [[PWY0-1335]], NADH to cytochrome bo oxidase electron transfer I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1335 PWY0-1335]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1334]], NADH to cytochrome bd oxidase electron transfer I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1334 PWY0-1334]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083]
 
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 89: Line 89:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29094 29094]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02163 R02163]
 
** [http://www.genome.jp/dbget-bin/www_bget?R02163 R02163]
Line 2,147: Line 2,149:
 
** [http://www.uniprot.org/uniprot/Q9TA18 Q9TA18]
 
** [http://www.uniprot.org/uniprot/Q9TA18 Q9TA18]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.6.5.3}}
 
{{#set: common name=NADH:ubiquinone oxidoreductase (H+-transporting)}}
 
{{#set: common name=NADH:ubiquinone oxidoreductase (H+-transporting)}}
 
{{#set: common name=NADH dehydrogenase (ubiquinone)}}
 
{{#set: common name=NADH dehydrogenase (ubiquinone)}}
−
{{#set: ec number=EC-1.6.5.3}}
+
{{#set: gene associated=SJ22333|SJ15310|SJ14995|SJ19412|SJ16410|SJ05715|SJ21333|SJ10422|SJ21017|SJ09960|SJ15450|SJ21895|SJ03600|SJ19948|SJ02471}}
−
{{#set: gene associated=SJ16410|SJ02471|SJ03600|SJ22333|SJ15310|SJ09960|SJ21895|SJ19412|SJ19948|SJ21333|SJ21017|SJ05715|SJ14995|SJ15450|SJ10422}}
+
{{#set: in pathway=PWY-6692|PWY0-1335|PWY0-1334|PWY-3781|PWY-5083|PWY-4302}}
−
{{#set: in pathway=PWY-4302|PWY-3781|PWY-6692|PWY0-1334|PWY0-1335|PWY-5083}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:54, 10 January 2019

Reaction NADH-DEHYDROG-A-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • NADH:ubiquinone oxidoreductase (H+-transporting)
    • NADH dehydrogenase (ubiquinone)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a ubiquinone[c] + 1 NADH[c] + 5 H+[c] <=> 4 H+[e] + 1 NAD+[c] + 1 an ubiquinol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6692, Fe(II) oxidation: PWY-6692
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-1335, NADH to cytochrome bo oxidase electron transfer I: PWY0-1335
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1334, NADH to cytochrome bd oxidase electron transfer I: PWY0-1334
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-3781, aerobic respiration I (cytochrome c): PWY-3781
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5083, NAD/NADH phosphorylation and dephosphorylation: PWY-5083
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4302, aerobic respiration III (alternative oxidase pathway): PWY-4302
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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