Difference between revisions of "RXN-11213"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11213 RXN-11213] == * direction: ** LEFT-TO-RIGHT * common name: ** methylmalonate-semialdehyde...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.2.1.27 EC-1.2.1.27] | ** [http://enzyme.expasy.org/EC/1.2.1.27 EC-1.2.1.27] | ||
| + | * common name: | ||
| + | ** methylmalonate-semialdehyde dehydrogenase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CH3-MALONATE-S-ALD]][c] '''=>''' 1 [[PROPIONYL-COA]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 coenzyme A[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 (S)-methylmalonate-semialdehyde[c] '''=>''' 1 propanoyl-CoA[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[SJ17249]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | * Gene: [[ | + | * Gene: [[SJ00780]] |
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| Line 27: | Line 27: | ||
== Pathways == | == Pathways == | ||
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY] | * [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY] | ||
| − | ** ''' | + | ** '''6''' reactions found over '''8''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 37: | Line 37: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20805 20805] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00935 R00935] | ** [http://www.genome.jp/dbget-bin/www_bget?R00935 R00935] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-1.2.1.27}} | {{#set: ec number=EC-1.2.1.27}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=methylmalonate-semialdehyde dehydrogenase}} |
| + | {{#set: gene associated=SJ17249|SJ00780}} | ||
{{#set: in pathway=VALDEG-PWY}} | {{#set: in pathway=VALDEG-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 14:57, 10 January 2019
Contents
Reaction RXN-11213
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- methylmalonate-semialdehyde dehydrogenase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CO-A[c] + 1 NAD[c] + 1 WATER[c] + 1 CH3-MALONATE-S-ALD[c] => 1 PROPIONYL-COA[c] + 1 HCO3[c] + 1 NADH[c] + 1 PROTON[c]
- With common name(s):
- 1 coenzyme A[c] + 1 NAD+[c] + 1 H2O[c] + 1 (S)-methylmalonate-semialdehyde[c] => 1 propanoyl-CoA[c] + 1 hydrogencarbonate[c] + 1 NADH[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ17249
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ00780
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- VALDEG-PWY, L-valine degradation I: VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
