Difference between revisions of "RXN0-5330"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5330 RXN0-5330] == * direction: ** LEFT-TO-RIGHT * common name: ** NADH dehydrogenase (ubiquin...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** NADH dehydrogenase (ubiquinone)
 
−
** NADH:ubiquinone oxidoreductase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.6.5.9 EC-1.6.5.9]
 
** [http://enzyme.expasy.org/EC/1.6.5.9 EC-1.6.5.9]
 +
* common name:
 +
** NADH:ubiquinone oxidoreductase
 +
** NADH dehydrogenase (ubiquinone)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[Ubiquinones]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[NAD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 a ubiquinone[c] '''+''' 1 NADH[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 NAD+[c]
+
** 1 a ubiquinone[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 NAD+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ21017]]
+
* Gene: [[SJ21895]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ15450]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ22333]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 25: Line 31:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ05715]]
+
* Gene: [[SJ15310]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ21333]]
+
* Gene: [[SJ10422]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ15310]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ16410]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ02471]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ15450]]
+
* Gene: [[SJ03600]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ21895]]
+
* Gene: [[SJ21333]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ02471]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
 
* Gene: [[SJ14995]]
 
* Gene: [[SJ14995]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ22333]]
+
* Gene: [[SJ05715]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ09960]]
−
* Gene: [[SJ10422]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
** Source: [[orthology-ectocarpus_siliculosus]]
+
* Gene: [[SJ16410]]
−
* Gene: [[SJ09960]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ03600]]
+
* Gene: [[SJ21017]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1573]], nitrate reduction VIIIb (dissimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1573 PWY0-1573]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1567 PWY0-1567]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transfer II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1568 PWY0-1568]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7269 PWY-7269]
 
* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7269 PWY-7269]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
 
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1567 PWY0-1567]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transfer II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1568 PWY0-1568]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1573]], nitrate reduction VIIIb (dissimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1573 PWY0-1573]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 83: Line 83:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23152 23152]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23153 23153]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=NADH dehydrogenase (ubiquinone)}}
 
−
{{#set: common name=NADH:ubiquinone oxidoreductase}}
 
 
{{#set: ec number=EC-1.6.5.9}}
 
{{#set: ec number=EC-1.6.5.9}}
−
{{#set: gene associated=SJ21017|SJ19412|SJ05715|SJ21333|SJ15310|SJ16410|SJ15450|SJ21895|SJ02471|SJ14995|SJ22333|SJ10422|SJ09960|SJ03600}}
+
{{#set: common name=NADH:ubiquinone oxidoreductase}}
−
{{#set: in pathway=PWY0-1573|PWY0-1567|PWY0-1568|PWY-7269|PWY-7279}}
+
{{#set: common name=NADH dehydrogenase (ubiquinone)}}
 +
{{#set: gene associated=SJ21895|SJ15450|SJ22333|SJ19412|SJ15310|SJ10422|SJ02471|SJ03600|SJ21333|SJ14995|SJ05715|SJ09960|SJ16410|SJ21017}}
 +
{{#set: in pathway=PWY-7269|PWY-7279|PWY0-1567|PWY0-1568|PWY0-1573}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:19, 10 January 2019

Reaction RXN0-5330

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • NADH:ubiquinone oxidoreductase
    • NADH dehydrogenase (ubiquinone)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a ubiquinone[c] + 1 NADH[c] + 1 H+[c] => 1 an ubiquinol[c] + 1 NAD+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7269, NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): PWY-7269
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast): PWY-7279
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1567, NADH to cytochrome bo oxidase electron transfer II: PWY0-1567
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1568, NADH to cytochrome bd oxidase electron transfer II: PWY0-1568
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1573, nitrate reduction VIIIb (dissimilatory): PWY0-1573
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN0-5330&oldid=22625"