Difference between revisions of "RXN0-2044"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2044 RXN0-2044] == * direction: ** REVERSIBLE * common name: ** 3-hydroxyacyl-CoA dehydrogenas...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** 3-hydroxyacyl-CoA dehydrogenase
 
−
** 3-hydroxyadipyl-CoA dehydrogenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 +
* common name:
 +
** 3-hydroxyadipyl-CoA dehydrogenase
 +
** 3-hydroxyacyl-CoA dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETO-ADIPYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[3-HYDROXYADIPYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[3-KETO-ADIPYL-COA]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (3S)-hydroxyadipyl-CoA[c] '''+''' 1 NAD+[c] '''<=>''' 1 3-oxoadipyl-CoA[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
+
** 1 (3S)-hydroxyadipyl-CoA[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 3-oxoadipyl-CoA[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ16470]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 
* Gene: [[SJ16180]]
 
* Gene: [[SJ16180]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 +
* Gene: [[SJ01444]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 
* Gene: [[SJ21390]]
 
* Gene: [[SJ21390]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[SJ17348]]
+
* Gene: [[SJ03584]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
−
* Gene: [[SJ16470]]
+
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: GO-TERM
+
 
* Gene: [[SJ07211]]
 
* Gene: [[SJ07211]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
* Gene: [[SJ01444]]
+
* Gene: [[SJ17348]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 
* Gene: [[SJ06127]]
 
* Gene: [[SJ06127]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321]
 
* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321]
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 57: Line 57:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34851 34851]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34854 34854]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941]
 
** [http://www.genome.jp/dbget-bin/www_bget?R06941 R06941]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
 
−
{{#set: common name=3-hydroxyadipyl-CoA dehydrogenase}}
 
 
{{#set: ec number=EC-1.1.1.35}}
 
{{#set: ec number=EC-1.1.1.35}}
−
{{#set: gene associated=SJ03584|SJ16180|SJ21390|SJ17348|SJ16470|SJ07211|SJ01444|SJ06127}}
+
{{#set: common name=3-hydroxyadipyl-CoA dehydrogenase}}
−
{{#set: in pathway=PWY-1361|PWY0-321}}
+
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
 +
{{#set: gene associated=SJ16470|SJ16180|SJ01444|SJ21390|SJ03584|SJ07211|SJ17348|SJ06127}}
 +
{{#set: in pathway=PWY0-321|PWY-1361}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
+
{{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:31, 10 January 2019

Reaction RXN0-2044

  • direction:
    • REVERSIBLE
  • ec number:
  • common name:
    • 3-hydroxyadipyl-CoA dehydrogenase
    • 3-hydroxyacyl-CoA dehydrogenase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-321, phenylacetate degradation I (aerobic): PWY0-321
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-1361, benzoyl-CoA degradation I (aerobic): PWY-1361
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/sjapgem/index.php?title=RXN0-2044&oldid=23004"