Difference between revisions of "GDPREDUCT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP reductase ** ri...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* common name:
 
* common name:
 
** GDP reductase
 
** GDP reductase
 
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DGDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c]
+
** 1 [[GDP]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[DGDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a reduced thioredoxin[c] '''+''' 1 GDP[c] '''=>''' 1 H2O[c] '''+''' 1 dGDP[c] '''+''' 1 an oxidized thioredoxin[c]
+
** 1 GDP[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 dGDP[c] '''+''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Line 21: Line 21:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ14458]]
+
* Gene: [[SJ20794]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ17066]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** Assignment: GO-TERM
+
* Gene: [[SJ03698]]
−
* Gene: [[SJ21120]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
* Gene: [[SJ03697]]
 
* Gene: [[SJ03697]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ20794]]
+
* Gene: [[SJ14458]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[SJ18284]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-ectocarpus_siliculosus]]
 
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[SJ17066]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 
* Gene: [[SJ16809]]
 
* Gene: [[SJ16809]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ03698]]
+
* Gene: [[SJ21120]]
−
** Source: [[annotation-saccharina_japonica_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[SJ18284]]
+
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
** Source: [[orthology-arabidopsis_thaliana]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
 
* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 67: Line 67:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28030 28030]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28032 28032]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02019 R02019]
 
** [http://www.genome.jp/dbget-bin/www_bget?R02019 R02019]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-1.17.4.1}}
 
{{#set: common name=GDP reductase}}
 
{{#set: common name=GDP reductase}}
 
{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
 
{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
−
{{#set: ec number=EC-1.17.4.1}}
+
{{#set: gene associated=SJ21121|SJ20794|SJ03698|SJ03697|SJ14458|SJ18284|SJ17066|SJ16809|SJ21120}}
−
{{#set: gene associated=SJ21121|SJ14458|SJ17066|SJ21120|SJ03697|SJ20794|SJ16809|SJ03698|SJ18284}}
+
{{#set: in pathway=PWY-7226|PWY-7222}}
−
{{#set: in pathway=PWY-7222|PWY-7226}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:36, 10 January 2019

Reaction GDPREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • GDP reductase
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP[c] + 1 a reduced thioredoxin[c] => 1 dGDP[c] + 1 an oxidized thioredoxin[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7226, guanosine deoxyribonucleotides de novo biosynthesis I: PWY-7226
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II: PWY-7222
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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