Difference between revisions of "TRIMETHYLLYSINE-DIOXYGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIMETHYLLYSINE-DIOXYGENASE-RXN TRIMETHYLLYSINE-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT *...")
 
 
Line 3: Line 3:
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** trimethyllysine dioxygenase
 
 
* ec number:
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.14.11.8 EC-1.14.11.8]
 
** [http://enzyme.expasy.org/EC/1.14.11.8 EC-1.14.11.8]
 +
* common name:
 +
** trimethyllysine dioxygenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[N6N6N6-TRIMETHYL-L-LYSINE]][c] '''=>''' 1 [[3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 N6,N6,N6-trimethyl-L-lysine[c] '''=>''' 1 3-hydroxy-N6,N6,N6-trimethyl-L-lysine[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c]
+
** 1 N6,N6,N6-trimethyl-L-lysine[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 3-hydroxy-N6,N6,N6-trimethyl-L-lysine[c] '''+''' 1 succinate[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ12451]]
+
* Gene: [[SJ15054]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 23: Line 23:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ15054]]
+
* Gene: [[SJ12451]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ01929]]
+
* Gene: [[SJ04638]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ04638]]
+
* Gene: [[SJ09343]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 35: Line 35:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ18761]]
+
* Gene: [[SJ04639]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ04639]]
+
* Gene: [[SJ18761]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ09343]]
+
* Gene: [[SJ01929]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-6100]], L-carnitine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100]
 
* [[PWY-6100]], L-carnitine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 53: Line 53:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14181 14181]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14182 14182]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03451 R03451]
 
** [http://www.genome.jp/dbget-bin/www_bget?R03451 R03451]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trimethyllysine dioxygenase}}
 
 
{{#set: ec number=EC-1.14.11.8}}
 
{{#set: ec number=EC-1.14.11.8}}
−
{{#set: gene associated=SJ12451|SJ07386|SJ15054|SJ01929|SJ04638|SJ04640|SJ18761|SJ04639|SJ09343}}
+
{{#set: common name=trimethyllysine dioxygenase}}
 +
{{#set: gene associated=SJ15054|SJ07386|SJ12451|SJ04638|SJ09343|SJ04640|SJ04639|SJ18761|SJ01929}}
 
{{#set: in pathway=PWY-6100}}
 
{{#set: in pathway=PWY-6100}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 16:36, 10 January 2019

Reaction TRIMETHYLLYSINE-DIOXYGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • trimethyllysine dioxygenase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6100, L-carnitine biosynthesis: PWY-6100
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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