Difference between revisions of "RXN1F-150"

Revision as of 10:06, 18 May 2018

Reaction RXN1F-150

• direction:
  • LEFT-TO-RIGHT
• common name:
  • lycopene β-cyclase
• ec number:
  • EC-5.5.1.19
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 CPD1F-114[c] => 1 CPD1F-126[c]
• With common name(s):
  • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: SJ11349
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ11348
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ05110
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ11355
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ05072
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ09087
  • Source: orthology-arabidopsis_thaliana
• Gene: SJ04962
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-arabidopsis_thaliana

Pathways

• PWY-5943, β-carotene biosynthesis: PWY-5943
  • 2 reactions found over 2 reactions in the full pathway
• PWY-7591, okenone biosynthesis: PWY-7591
  • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
• Category: annotation
  • Source: annotation-saccharina_japonica_genome
    • Tool: pathwaytools

External links

• RHEA:
  • 32222
• LIGAND-RXN:
  • R05341