Difference between revisions of "TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN"

Revision as of 10:14, 18 May 2018

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

• direction:
  • LEFT-TO-RIGHT
• common name:
  • pseudouridine synthase
  • tRNA pseudouridine38-40 synthase
• ec number:
  • EC-5.4.99.12
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 tRNA-uridine-38-40[c] => 1 tRNA-pseudouridine-38-40[c]
• With common name(s):
  • 1 a uridine38-40 in tRNA[c] => 1 a pseudouridine38-40 in tRNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: SJ14655
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ05810
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ02379
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ19256
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ07661
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ21903
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ08821
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ08379
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ10070
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ04484
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ08378
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ22218
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ20499
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ03994
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ05951
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ19705
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ13454
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ11677
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ04338
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ18426
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ17534
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ13453
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ00580
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ06465
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ11314
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ03529
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ03627
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ19688
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
• Gene: SJ20141
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ04758
  • Source: annotation-saccharina_japonica_genome
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus

Pathways

Reconstruction information

• Category: orthology
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-saccharina_japonica_genome
    • Tool: pathwaytools

External links

• LIGAND-RXN:
  • R03020
• UNIPROT:
  • Q59069
  • P47428
  • P45291
  • Q45557
  • Q50291
  • P53167
  • Q12211
  • P73295
  • P07649