RXN0-6480

Reaction RXN0-6480

• direction:
  • LEFT-TO-RIGHT
• common name:
  • ribonuclease
• ec number:
  • EC-3.1.26.5
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 CPD0-2354[c] + 1 WATER[c] => 1 tRNA-fragment[c] + 1 tRNAs[c]
• With common name(s):
  • 1 a tRNA precursor with a 5' extension[c] + 1 H2O[c] => 1 a tRNA fragment[c] + 1 an uncharged tRNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: SJ17040
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ09263
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ10376
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ11313
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ17384
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ07712
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ06697
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ19585
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ16938
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
• Gene: SJ17442
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ04162
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
• Gene: SJ06336
  • Source: annotation-saccharina_japonica_genome
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus

Pathways

• PWY0-1479, tRNA processing: PWY0-1479
  • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-saccharina_japonica_genome
    • Tool: pathwaytools