Difference between revisions of "1.3.7.3-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.3-RXN 1.3.7.3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phycoerythrobilin:ferre...") |
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| Line 3: | Line 3: | ||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.3.7.3 EC-1.3.7.3] | ** [http://enzyme.expasy.org/EC/1.3.7.3 EC-1.3.7.3] | ||
| + | * common name: | ||
| + | ** phycoerythrobilin:ferredoxin oxidoreductase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** | + | ** 1 [[1516-DIHYDROBILIVERDIN]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[3Z-PHYCOERYTHROBILIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** | + | ** 1 15,16-dihydrobiliverdin[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' 1 (3Z)-phycoerythrobilin[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 23: | Line 23: | ||
== Pathways == | == Pathways == | ||
* [[PWY-5915]], phycoerythrobilin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5915 PWY-5915] | * [[PWY-5915]], phycoerythrobilin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5915 PWY-5915] | ||
| − | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
* [[PWY-7579]], phycourobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7579 PWY-7579] | * [[PWY-7579]], phycourobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7579 PWY-7579] | ||
| − | ** ''' | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 34: | Line 34: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22094 22094] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R05819 R05819] | ** [http://www.genome.jp/dbget-bin/www_bget?R05819 R05819] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-1.3.7.3}} | {{#set: ec number=EC-1.3.7.3}} | ||
| + | {{#set: common name=phycoerythrobilin:ferredoxin oxidoreductase}} | ||
{{#set: gene associated=SJ04581}} | {{#set: gene associated=SJ04581}} | ||
{{#set: in pathway=PWY-5915|PWY-7579}} | {{#set: in pathway=PWY-5915|PWY-7579}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 13:45, 10 January 2019
Contents
Reaction 1.3.7.3-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- phycoerythrobilin:ferredoxin oxidoreductase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 1516-DIHYDROBILIVERDIN[c] + 2 Reduced-ferredoxins[c] + 2 PROTON[c] => 1 3Z-PHYCOERYTHROBILIN[c] + 2 Oxidized-ferredoxins[c]
- With common name(s):
- 1 15,16-dihydrobiliverdin[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 2 H+[c] => 1 (3Z)-phycoerythrobilin[c] + 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ04581
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-5915, phycoerythrobilin biosynthesis I: PWY-5915
- 3 reactions found over 4 reactions in the full pathway
- PWY-7579, phycourobilin biosynthesis: PWY-7579
- 3 reactions found over 5 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
