Difference between revisions of "1.3.7.4-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phytochromobilin:ferred...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| − | |||
| − | |||
* ec number: | * ec number: | ||
** [http://enzyme.expasy.org/EC/1.3.7.4 EC-1.3.7.4] | ** [http://enzyme.expasy.org/EC/1.3.7.4 EC-1.3.7.4] | ||
| + | * common name: | ||
| + | ** phytochromobilin:ferredoxin oxidoreductase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[BILIVERDINE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' | + | ** 1 [[BILIVERDINE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[3Z-PHYTOCHROMOBILIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 biliverdin-IX-α[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' | + | ** 1 biliverdin-IX-α[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' 1 (3Z)-phytochromobilin[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
| Line 20: | Line 20: | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
| − | |||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
* [[PWY-7170]], phytochromobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7170 PWY-7170] | * [[PWY-7170]], phytochromobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7170 PWY-7170] | ||
| Line 35: | Line 35: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16379 16379] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R03678 R03678] | ** [http://www.genome.jp/dbget-bin/www_bget?R03678 R03678] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | |||
{{#set: ec number=EC-1.3.7.4}} | {{#set: ec number=EC-1.3.7.4}} | ||
| + | {{#set: common name=phytochromobilin:ferredoxin oxidoreductase}} | ||
{{#set: gene associated=SJ04581}} | {{#set: gene associated=SJ04581}} | ||
{{#set: in pathway=PWY-7170}} | {{#set: in pathway=PWY-7170}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=orthology-arabidopsis_thaliana | + | {{#set: reconstruction source=orthology-arabidopsis_thaliana|annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 11:43, 10 January 2019
Contents
Reaction 1.3.7.4-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- phytochromobilin:ferredoxin oxidoreductase
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 BILIVERDINE[c] + 2 Reduced-ferredoxins[c] + 2 PROTON[c] => 1 3Z-PHYTOCHROMOBILIN[c] + 2 Oxidized-ferredoxins[c]
- With common name(s):
- 1 biliverdin-IX-α[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 2 H+[c] => 1 (3Z)-phytochromobilin[c] + 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ04581
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-arabidopsis_thaliana
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-7170, phytochromobilin biosynthesis: PWY-7170
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
