############# Model summary Number of compounds: 2751 Number of reactions: 2799 Number of genes: 2728 Ratio rxn with genes/rxns: 87% ############# Analyzing targets #Topological analysis Number of targets: 38 Reading draft network from /shared/t_lutea/networks/Tlutea_final.sbml ... done. Reading seeds from growth_medium/seeds_artefacts.sbml ... done. Reading targets from targets_compounds/targets.sbml ... done. Checking draftnet for unproducible targets ... done. 19 producible targets: "M_DODECANOATE_c" "M_CHLOROPHYLLIDE__45__A_c" "M_CPD__45__7830_c" "M_CPD__45__7836_c" "M_PHOSPHATIDYLCHOLINE_c" "M_CPD__45__12575_c" "M_Galactosyl__45__galactosyl__45__diacyl__45__glycerols_c" "M_D__45__Galactosyl__45__12__45__diacyl__45__glycerols_c" "M_CPD__45__10337_c" "M_CPD__45__8462_c" "M_UDP_c" "M_CPD__45__9245_c" "M_OLEATE__45__CPD_c" "M_CPD__45__13792_c" "M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c" "M_CHLOROPHYLL__45__A_c" "M_PALMITATE_c" "M_L__45__PHOSPHATIDATE_c" "M_CPD__45__10244_c" 19 unproducible targets: "M_CPD0__45__2208_c" "M_1__45__3__45__beta__45__D__45__Glucans_c" "M_CPD__45__8117_c" "M_CPD__45__8121_c" "M_CPD__45__8120_c" "M_Carotenes_c" "M_ARACHIDONIC_c" "M_CPD__45__8469_c" "M_Phosphoglycerides_c" "M_GLYCOSYLGLYCERIDES_c" "M_carotenoids_c" "M_STEARIC_c" "M_Triacylglycerides_c" "M_LINOLENIC_c" "M_CPD__45__12653_c" "M_LINOLEIC_c" "M_Xanthophylls_c" "M_Carbohydrates_c" "M_CPD__45__15680_c" #Flux Balance Analysis Carbohydrates_c // Carbohydrates_c 74.5489512618 positive L__45__PHOSPHATIDATE_c // L-PHOSPHATIDATE_c 525.988348937 positive CPD__45__12575_c // CPD-12575_c 500.0 positive 1__45__3__45__beta__45__D__45__Glucans_c // 1-3-beta-D-Glucans_c 74.5489512618 positive UDP_c // UDP_c 600.0 positive CHLOROPHYLL__45__A_c // CHLOROPHYLL-A_c 74.5489512618 positive CHLOROPHYLLIDE__45__A_c // CHLOROPHYLLIDE-A_c 81.3241311223 positive CPD__45__10337_c // CPD-10337_c 84.2622327849 positive Xanthophylls_c // Xanthophylls_c 74.5489512618 positive Carotenes_c // Carotenes_c 74.5489512618 positive carotenoids_c // carotenoids_c 74.5489512618 positive DODECANOATE_c // DODECANOATE_c 239.743488841 positive CPD__45__8469_c // CPD-8469_c 74.5489512618 positive CPD__45__7836_c // CPD-7836_c 208.7143825 positive CPD__45__8462_c // CPD-8462_c 167.088216201 positive PALMITATE_c // PALMITATE_c 186.584587865 positive CPD__45__7830_c // CPD-7830_c 74.5489512618 positive STEARIC_c // STEARIC_c 74.5489512618 positive CPD0__45__2208_c // CPD0-2208_c 74.5489512618 positive CPD__45__9245_c // CPD-9245_c 181.836617293 positive CPD__45__15680_c // CPD-15680_c 74.5489512618 positive OLEATE__45__CPD_c // OLEATE-CPD_c 170.633975648 positive LINOLEIC_c // LINOLEIC_c 74.5489512618 positive CPD__45__8117_c // CPD-8117_c 74.5489512618 positive LINOLENIC_c // LINOLENIC_c 74.5489512618 positive CPD__45__12653_c // CPD-12653_c 74.5489512618 positive ARACHIDONIC_c // ARACHIDONIC_c 74.5489512618 positive CPD__45__8120_c // CPD-8120_c 74.5489512618 positive CPD__45__8121_c // CPD-8121_c 74.5489512618 positive 5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c // 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE_c 172.267248952 positive CPD__45__13792_c // CPD-13792_c 152.25005385 positive CPD__45__10244_c // CPD-10244_c 158.774513083 positive Phosphoglycerides_c // Phosphoglycerides_c 74.5489512618 positive PHOSPHATIDYLCHOLINE_c // PHOSPHATIDYLCHOLINE_c 176.470588235 positive GLYCOSYLGLYCERIDES_c // GLYCOSYLGLYCERIDES_c 74.5489512618 positive D__45__Galactosyl__45__12__45__diacyl__45__glycerols_c // D-Galactosyl-12-diacyl-glycerols_c 524.073328841 positive Galactosyl__45__galactosyl__45__diacyl__45__glycerols_c // Galactosyl-galactosyl-diacyl-glycerols_c 514.8610514 positive Triacylglycerides_c // Triacylglycerides_c 74.5489512618 positive ############# Computing optimization Testing reaction RME294 Growth rate: 74.5489512618 Status: optimal IN FLUXES OUT FLUXES OBJECTIVES -------------------- --------------------- ------------ Light_e 500 Biomass__45_... 74.5 RME294 74.5 WATER_e 27.6 SULFATE_e 2.27 MG__43__2_e 0.194 FVA analysis: Blocked reactions: 1870 Essential reactions: 93 Essential genes: 43 7/7 compounds with positive flux 0/7 compounds without flux WATER_c // WATER_c 30.6092790095 positive L__45__PHOSPHATIDATE_c // L-PHOSPHATIDATE_c 30.6094296905 positive DNA__45__Holder_c // DNA-Holder_c 30.6097813302 positive ATP_c // ATP_c 73.4236852571 positive General__45__Protein__45__Substrates_c // General-Protein-Substrates_c 30.6055133285 positive RNA__45__Holder_c // RNA-Holder_c 30.6278438677 positive CHLOROPHYLL__45__A_c // CHLOROPHYLL-A_c 30.6090339722 positive